File: exn_22_o_vulgar_cigar.exn

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Command line: [exonerate -m genome2genome ../intron.fa /media/Waterloo/Downloads/genomes/scer_s288c/scer_s288c.fa --bestn 3 --showalignment no --showvulgar yes --showcigar yes]
Hostname: [blackbriar]
cigar: sacCer3_dna 529 0 - gi|330443520|ref|NC_001136.10| 1319997 1319468 - 2641  M 26 M 3 M 500
vulgar: sacCer3_dna 529 0 - gi|330443520|ref|NC_001136.10| 1319997 1319468 - 2641 M 26 26 C 3 3 M 500 500
cigar: sacCer3_dna 0 529 + gi|330443520|ref|NC_001136.10| 1319468 1319997 + 2641  M 90 M 3 M 436
vulgar: sacCer3_dna 0 529 + gi|330443520|ref|NC_001136.10| 1319468 1319997 + 2641 M 90 90 C 3 3 M 436 436
cigar: sacCer3_dna 491 162 - gi|330443489|ref|NC_001135.5| 23668 115569 + 267  M 29 D 8983 M 32 D 2 M 2 D 1 M 15 D 9555 M 3 I 1 M 5 D 2 M 3 D 1 M 4 D 1 M 18 M 1 D 55423 M 5 M 22 I 3 M 46 D 17598 M 14 D 1 M 9 I 1 M 15 D 3 M 17 D 3 M 1 D 1 M 13 D 1 M 6 I 1 M 12 D 2 M 45 D 1 M 6
vulgar: sacCer3_dna 491 162 - gi|330443489|ref|NC_001135.5| 23668 115569 + 267 M 29 29 5 0 2 I 0 8979 3 0 2 M 32 32 G 0 2 M 2 2 G 0 1 M 15 15 5 0 2 I 0 9551 3 0 2 M 3 3 G 1 0 M 5 5 G 0 2 M 3 3 G 0 1 M 4 4 G 0 1 M 18 18 S 1 1 5 0 2 I 0 55419 3 0 2 S 2 2 C 3 3 M 22 22 G 3 0 M 46 46 5 0 2 I 0 17594 3 0 2 M 14 14 G 0 1 M 9 9 G 1 0 M 15 15 G 0 3 M 17 17 G 0 3 M 1 1 G 0 1 M 13 13 G 0 1 M 6 6 G 1 0 M 12 12 G 0 2 M 45 45 G 0 1 M 6 6
cigar: sacCer3_dna 529 78 - gi|330443667|ref|NC_001143.9| 641760 71883 - 267  M 31 I 3 M 4 I 2 M 19 D 3 M 9 D 1 M 6 I 1 M 7 D 154244 I 57 D 47 M 27 I 5 M 4 I 1 M 3 I 3 M 4 I 1 M 9 D 1 M 16 D 101116 I 31 M 25 D 1 M 15 I 1 M 9 I 1 M 2 I 1 M 14 M 20 D 177446 M 13 M 2 D 1 M 24 D 136697 I 7 D 6 I 1 D 1 I 1 D 1 I 1 D 1 I 1 D 1 I 2 D 1 I 1 D 1 I 1 D 1 I 3 D 1 I 2 D 1 I 1 D 1 I 1 D 1 I 2 D 2 I 2 D 2 I 17 M 14 I 2 M 22
vulgar: sacCer3_dna 529 78 - gi|330443667|ref|NC_001143.9| 641760 71883 - 267 M 31 31 G 3 0 M 4 4 G 2 0 M 19 19 G 0 3 M 9 9 G 0 1 M 6 6 G 1 0 M 5 5 5 2 2 I 0 154244 I 57 0 I 0 47 3 2 2 M 25 25 G 5 0 M 4 4 G 1 0 M 3 3 G 3 0 M 4 4 G 1 0 M 9 9 G 0 1 M 14 14 5 2 2 I 0 101116 I 31 0 3 2 2 M 23 23 G 0 1 M 15 15 G 1 0 M 9 9 G 1 0 M 2 2 G 1 0 M 14 14 C 18 18 S 2 2 5 0 2 I 0 177442 3 0 2 S 1 1 C 12 12 M 2 2 G 0 1 M 22 22 5 2 2 I 0 136697 I 7 0 I 0 6 I 1 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 2 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 3 0 I 0 1 I 2 0 I 0 1 I 1 0 I 0 1 I 1 0 I 0 1 I 2 0 I 0 2 I 2 0 I 0 2 I 17 0 3 2 2 M 12 12 G 2 0 M 22 22
-- completed exonerate analysis