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LOCUS NP_416719 367 aa linear CON 04-JUL-2013
DEFINITION outer membrane porin protein C [Escherichia coli str. K-12 substr.
MG1655].
ACCESSION NP_416719
VERSION NP_416719.1 GI:16130152
DBLINK Project: 57779
BioProject: PRJNA57779
DBSOURCE REFSEQ: accession NC_000913.2
KEYWORDS RefSeq.
SOURCE Escherichia coli str. K-12 substr. MG1655
ORGANISM Escherichia coli str. K-12 substr. MG1655
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales;
Enterobacteriaceae; Escherichia.
REFERENCE 1 (residues 1 to 367)
AUTHORS Riley,M., Abe,T., Arnaud,M.B., Berlyn,M.K., Blattner,F.R.,
Chaudhuri,R.R., Glasner,J.D., Horiuchi,T., Keseler,I.M., Kosuge,T.,
Mori,H., Perna,N.T., Plunkett,G. III, Rudd,K.E., Serres,M.H.,
Thomas,G.H., Thomson,N.R., Wishart,D. and Wanner,B.L.
TITLE Escherichia coli K-12: a cooperatively developed annotation
snapshot--2005
JOURNAL Nucleic Acids Res. 34 (1), 1-9 (2006)
PUBMED 16397293
REMARK Publication Status: Online-Only
REFERENCE 2 (residues 1 to 367)
AUTHORS Blattner,F.R., Plunkett,G. III, Bloch,C.A., Perna,N.T., Burland,V.,
Riley,M., Collado-Vides,J., Glasner,J.D., Rode,C.K., Mayhew,G.F.,
Gregor,J., Davis,N.W., Kirkpatrick,H.A., Goeden,M.A., Rose,D.J.,
Mau,B. and Shao,Y.
TITLE The complete genome sequence of Escherichia coli K-12
JOURNAL Science 277 (5331), 1453-1474 (1997)
PUBMED 9278503
REFERENCE 3 (residues 1 to 367)
AUTHORS Arnaud,M., Berlyn,M.K.B., Blattner,F.R., Galperin,M.Y.,
Glasner,J.D., Horiuchi,T., Kosuge,T., Mori,H., Perna,N.T.,
Plunkett,G. III, Riley,M., Rudd,K.E., Serres,M.H., Thomas,G.H. and
Wanner,B.L.
TITLE Workshop on Annotation of Escherichia coli K-12
JOURNAL Unpublished
REMARK Woods Hole, Mass., on 14-18 November 2003 (sequence corrections)
REFERENCE 4 (residues 1 to 367)
AUTHORS Glasner,J.D., Perna,N.T., Plunkett,G. III, Anderson,B.D.,
Bockhorst,J., Hu,J.C., Riley,M., Rudd,K.E. and Serres,M.H.
TITLE ASAP: Escherichia coli K-12 strain MG1655 version m56
JOURNAL Unpublished
REMARK ASAP download 10 June 2004 (annotation updates)
REFERENCE 5 (residues 1 to 367)
AUTHORS Hayashi,K., Morooka,N., Mori,H. and Horiuchi,T.
TITLE A more accurate sequence comparison between genomes of Escherichia
coli K12 W3110 and MG1655 strains
JOURNAL Unpublished
REMARK GenBank accessions AG613214 to AG613378 (sequence corrections)
REFERENCE 6 (residues 1 to 367)
AUTHORS Perna,N.T.
TITLE Escherichia coli K-12 MG1655 yqiK-rfaE intergenic region, genomic
sequence correction
JOURNAL Unpublished
REMARK GenBank accession AY605712 (sequence corrections)
REFERENCE 7 (residues 1 to 367)
AUTHORS Rudd,K.E.
TITLE A manual approach to accurate translation start site annotation: an
E. coli K-12 case study
JOURNAL Unpublished
REFERENCE 8 (residues 1 to 367)
CONSRTM NCBI Genome Project
TITLE Direct Submission
JOURNAL Submitted (04-MAR-2013) National Center for Biotechnology
Information, NIH, Bethesda, MD 20894, USA
REFERENCE 9 (residues 1 to 367)
AUTHORS Rudd,K.E.
TITLE Direct Submission
JOURNAL Submitted (06-FEB-2013) Department of Biochemistry and Molecular
Biology, University of Miami Miller School of Medicine, 118 Gautier
Bldg., Miami, FL 33136, USA
REMARK Sequence update by submitter
REFERENCE 10 (residues 1 to 367)
AUTHORS Rudd,K.E.
TITLE Direct Submission
JOURNAL Submitted (24-APR-2007) Department of Biochemistry and Molecular
Biology, University of Miami Miller School of Medicine, 118 Gautier
Bldg., Miami, FL 33136, USA
REMARK Annotation update from ecogene.org as a multi-database
collaboration
REFERENCE 11 (residues 1 to 367)
AUTHORS Plunkett,G. III.
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2006) Laboratory of Genetics, University of
Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA
REMARK Protein updates by submitter
REFERENCE 12 (residues 1 to 367)
AUTHORS Plunkett,G. III.
TITLE Direct Submission
JOURNAL Submitted (10-JUN-2004) Laboratory of Genetics, University of
Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA
REMARK Sequence update by submitter
REFERENCE 13 (residues 1 to 367)
AUTHORS Plunkett,G. III.
TITLE Direct Submission
JOURNAL Submitted (13-OCT-1998) Laboratory of Genetics, University of
Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA
REFERENCE 14 (residues 1 to 367)
AUTHORS Blattner,F.R. and Plunkett,G. III.
TITLE Direct Submission
JOURNAL Submitted (02-SEP-1997) Laboratory of Genetics, University of
Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA
REFERENCE 15 (residues 1 to 367)
AUTHORS Blattner,F.R. and Plunkett,G. III.
TITLE Direct Submission
JOURNAL Submitted (16-JAN-1997) Laboratory of Genetics, University of
Wisconsin, 425G Henry Mall, Madison, WI 53706-1580, USA
COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final
NCBI review. The reference sequence is identical to AAC75275.
Method: conceptual translation.
FEATURES Location/Qualifiers
source 1..367
/organism="Escherichia coli str. K-12 substr. MG1655"
/strain="K-12"
/sub_strain="MG1655"
/db_xref="taxon:511145"
Protein 1..367
/product="outer membrane porin protein C"
/function="membrane; Outer membrane constituents"
/calculated_mol_wt=40237
mat_peptide 22..367
/product="outer membrane porin protein C"
/experiment="N-terminus verified by Edman degradation:
PMID 6297988,9298646,9629924"
/calculated_mol_wt=38308
Region 25..367
/region_name="OmpC"
/note="Outer membrane protein (porin) [Cell envelope
biogenesis, outer membrane]; COG3203"
/db_xref="CDD:225744"
Region 30..367
/region_name="gram_neg_porins"
/note="Porins form aqueous channels for the diffusion of
small hydrophillic molecules across the outer membrane.
Individual 16-strand anti-parallel beta-barrels form a
central pore, and trimerizes thru mainly hydrophobic
interactions at the interface. Trimers...; cd00342"
/db_xref="CDD:238208"
Site order(30,32,38,40..42,63..67,73,75..77,79,81..84,94..95,
97..101,111..113,145,147..148,327..328,331,363,365,367)
/site_type="other"
/note="trimer interface [polypeptide binding]"
/db_xref="CDD:238208"
Site order(37,58,95,126,145)
/site_type="other"
/note="eyelet of channel"
/db_xref="CDD:238208"
CDS 1..367
/gene="ompC"
/locus_tag="b2215"
/gene_synonym="ECK2207; JW2203; meoA; par"
/coded_by="complement(NC_000913.2:2309668..2310771)"
/GO_component="GO:0009279 - cell outer membrane;
GO:0009274 - peptidoglycan-based cell wall"
/note="outer membrane protein 1b (Ib;c)"
/transl_table=11
/db_xref="ASAP:ABE-0007321"
/db_xref="UniProtKB/Swiss-Prot:P06996"
/db_xref="EcoGene:EG10670"
/db_xref="GeneID:946716"
CONTIG join(WP_000865568.1:1..367)
ORIGIN
1 mkvkvlsllv pallvagaan aaevynkdgn kldlygkvdg lhyfsdnkdv dgdqtymrlg
61 fkgetqvtdq ltgygqweyq iqgnsaenen nswtrvafag lkfqdvgsfd ygrnygvvyd
121 vtswtdvlpe fggdtygsdn fmqqrgngfa tyrntdffgl vdglnfavqy qgkngnpsge
181 gftsgvtnng rdalrqngdg vggsitydye gfgiggaiss skrtdaqnta ayigngdrae
241 tytgglkyda nniylaaqyt qtynatrvgs lgwankaqnf eavaqyqfdf glrpslaylq
301 skgknlgrgy ddedilkyvd vgatyyfnkn mstyvdykin llddnqftrd agintdniva
361 lglvyqf
//
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