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^SAMPLE=GSM691
!Sample_status = Public on Nov 28 2001
!Sample_title = SAGE_Duke_40N
!Sample_type = sage
!Sample_anchor = NlaIII
!Sample_organism = Homo sapiens
!Sample_target_source = Breast, isolated normal epithelial organoids
!Sample_tag_count = 7165
!Sample_description = This library represents a Cancer Genome Anatomy Project library, which was either produced through CGAP funding, or donated to CGAP.
!Sample_description = The Cancer Genome Anatomy Project (CGAP: http://cgap.nci.nih.gov) is an interdisciplinary program established and administered by the National Cancer Institute (NCI: http://www.nci.nih.gov) to generate the information and technological tools needed to decipher the molecular anatomy of the cancer cell.
!Sample_description = Library constructed by Riggins laboratory Tissue supplied by Jeffrey Marks, Ph.D.
!Sample_description = Organ: Breast
!Sample_description = Tissue_type: normal epithelial organoids
!Sample_description = Library treatment: non-normalized
!Sample_description = Tissue description: Breast, Isolated normal epithelial organoids. Derived from a reduction mammoplasty.
!Sample_description = Tissue supplier: Jeffrey Marks, Ph.D.
!Sample_description = Sample type: Bulk
!Sample_description = Producer: Riggins Laboratory
!Sample_description = Clones generated to date: 768
!Sample_description = Sequences generated to date: 572
!Sample_author = Jeffrey,,Marks
!Sample_author = Gregory,J,Riggins
!Sample_author = Robert,L,Strausberg
!Sample_web_link = http://cgap.nci.nih.gov
!Sample_submission_date = Nov 28 2001
!Sample_submitter_name = Robert,L,Strausberg
!Sample_submitter_email = cgapbs-r@mail.nih.gov
!Sample_submitter_institute = National Cancer Institute
!Sample_submitter_department = Cancer Genome Anatomy Project
!Sample_submitter_city = Bethesda,MD,20892,USA
!Sample_submitter_phone = 301-496-1550
!Sample_submitter_web_link = http://cgap.nci.nih.gov/
!Sample_platform_id = GPL4
!Sample_series_id = GSE14
#TAG = Ten base SAGE tag, LINK_PRE:"http://www.ncbi.nlm.nih.gov/SAGE/SAGEtag.cgi?tag="
#COUNT = Absolute tag count
#TPM = Tags per million, or (1000000*COUNT)/(Total tags)
TAG COUNT TPM
TTGGGGTTTC 202 28192.6
TAGGTTGTCT 129 18004.2
GAGGGAGTTT 109 15212.8
TGCACGTTTT 92 12840.2
CTGGGTTAAT 83 11584.1
GTTGTGGTTA 82 11444.5
GATCCCAACT 63 8792.74
TGCAGTCACT 59 8234.47
GGATTTGGCC 58 8094.91
GGGCTGGGGT 56 7815.77
ATAATTCTTT 44 6140.96
CTTCCTTGCC 42 5861.83
TTGGTCCTCT 40 5582.69
GGCAAGCCCC 36 5024.42
AACTAAAAAA 34 4745.29
AGGGCTTCCA 34 4745.29
AGGCTACGGA 33 4605.72
GTGAAACCCC 32 4466.15
AACTAACAAA 31 4326.59
GAAAAATGGT 30 4187.02
|
