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# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: s02.fasta
# target HMM database: /home/bow/db/hmmer/Pfam-A.hmm
# output directed to file: hmmer_cases/text_hmmscan_s02.out
# per-seq hits tabular output: hmmer_cases/tab_hmmscan_s02.out
# per-dom hits tabular output: hmmer_cases/domtab_hmmscan_s02.out
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|126362951:116-221 [L=106]
Description: leukocyte immunoglobulin-like receptor subfamily B member 1 isoform 2 precursor [Homo sapiens]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
1.4e-09 38.2 0.4 2.1e-09 37.6 0.3 1.3 1 Ig_3 Immunoglobulin domain
3.5e-05 23.7 0.1 4.3e-05 23.4 0.1 1.1 1 Ig_2 Immunoglobulin domain
Domain annotation for each model (and alignments):
>> Ig_3 Immunoglobulin domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 37.6 0.3 3e-13 2.1e-09 1 73 [. 9 84 .. 9 88 .. 0.94
Alignments for each domain:
== domain 1 score: 37.6 bits; conditional E-value: 3e-13
Ig_3 1 kPvisvspsptvtsggnvtLtCsaeggpppptisWy.....ietppelqgsegssssestLtissvtsedsgtYtCva 73
kP++s++psp+v+sggnv L+C ++ + +s + +++ +++++ ++ss +++++ +v+++ + Y+C+a
gi|126362951:116-221 9 KPTLSAQPSPVVNSGGNVILQCDSQVA--FDGFSLCkegedEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYA 84
8************************99..78888888****************************************9 PP
>> Ig_2 Immunoglobulin domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 23.4 0.1 6.2e-09 4.3e-05 1 80 [] 9 104 .. 9 104 .. 0.71
Alignments for each domain:
== domain 1 score: 23.4 bits; conditional E-value: 6.2e-09
Ig_2 1 kpvlvapp.svvtegenvtLtCsapgnptprvqwykdg.vels......qsqnq........lfipnvsaedsgtYtCra....rnseg 69
kp+l+a+p +vv++g nv L+C ++ + +++ k+g +e + + + + vs++ Y+C+a + +e+
gi|126362951:116-221 9 KPTLSAQPsPVVNSGGNVILQCDSQVA-FDGFSLCKEGeDEHPqclnsqP---HargssraiFSVGPVSPSRRWWYRCYAydsnSPYEW 93
799998885779*************85.899***9988655554443320...134455543444669************884433445 PP
Ig_2 70 gktstsveltv 80
+ +s+ +el v
gi|126362951:116-221 94 SLPSDLLELLV 104
88888888766 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (106 residues)
Target model(s): 13672 (2396357 nodes)
Passed MSV filter: 153 (0.0111908); expected 273.4 (0.02)
Passed bias filter: 143 (0.0104593); expected 273.4 (0.02)
Passed Vit filter: 11 (0.000804564); expected 13.7 (0.001)
Passed Fwd filter: 2 (0.000146284); expected 0.1 (1e-05)
Initial search space (Z): 13672 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 0.26u 0.12s 00:00:00.38 Elapsed: 00:00:00.19
# Mc/sec: 1336.91
//
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