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# hmmscan :: search sequence(s) against a profile database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file: s03.fasta
# target HMM database: /home/bow/db/hmmer/Pfam-A.hmm
# output directed to file: hmmer_cases/text_hmmscan_spc_notextw.out
# per-seq hits tabular output: hmmer_cases/tab_hmmscan_spc_notextw.out
# per-dom hits tabular output: hmmer_cases/domtab_hmmscan_spc_notextw.out
# max ASCII text line length: unlimited
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: gi|22748937|ref|NP_065801.1| [L=1204]
Description: exportin-5 [Homo sapiens]
Scores for complete sequence (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Model Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
7.8e-34 116.6 7.8 1.1e-33 116.1 3.4 2.8 2 Xpo1 Exportin 1-like protein
0.0039 16.9 0.0 0.033 14.0 0.0 2.7 2 IBN_N Importin-beta N-terminal domain
Domain annotation for each model (and alignments):
>> Xpo1 Exportin 1-like protein
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 116.1 3.4 1.6e-37 1.1e-33 2 148 .] 110 271 .. 109 271 .. 0.98
2 ? -1.8 0.0 0.35 2.4e+03 112 139 .. 499 525 .. 496 529 .. 0.86
Alignments for each domain:
== domain 1 score: 116.1 bits; conditional E-value: 1.6e-37
HHHHHHHHHHHHHHHHHHTTTTSTTHHHHHHHHHHG-HHHHHHHHHHHHHHHHHHCCS-TTTS-CCCHHHHHHHCHHHHHHHHHHHHHHHC-TT-..................HHHHHHHHHHHHHHCTTS-CHHCHCS...HHHHHCHHCCSCCCHHHHHHHH CS
Xpo1 2 kflrnklaealaelflqeypnqWpsffddllsllssspsglelllriLkvlpeEiadfsrskleqerrnelkdllrsqvqkilelllqileqsvskk...............sselveatLkclsswvswidiglivnsp..llsllfqlLndpelreaAvecL 148
+++++ l+++++e++++e+p++Wp+++ +l l++++++++el++ iL++l+e++++f ++l +rr++++++l++++++i+++ll+ l+++v+k+ ++++ a+L++l+ +++w+++++i +++ ll++l+ lLn++el+ A+ecL
gi|22748937|ref|NP_065801.1| 110 NHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTF--QTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYqqvktdtsqeskaqaNCRVGVAALNTLAGYIDWVSMSHITAENckLLEILCLLLNEQELQLGAAECL 271
89******************************************************99..79*********************************99*****************************************8889*********************8 PP
== domain 2 score: -1.8 bits; conditional E-value: 0.35
HHCTTS-CHHCHCS.HHHHHCHHCCSCC CS
Xpo1 112 swvswidiglivnspllsllfqlLndpe 139
s+v+w ++l+++s +++ +f+ Ln++e
gi|22748937|ref|NP_065801.1| 499 SFVQWEAMTLFLES-VITQMFRTLNREE 525
899*********98.8888899998776 PP
>> IBN_N Importin-beta N-terminal domain
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 14.0 0.0 4.8e-06 0.033 4 75 .. 36 98 .. 33 100 .. 0.87
2 ? -3.3 0.0 1.2 8e+03 57 75 .. 168 186 .. 165 187 .. 0.85
Alignments for each domain:
== domain 1 score: 14.0 bits; conditional E-value: 4.8e-06
HHHHHHHSCTHHHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHSCCHHHHHHHHCS-HHHHHHHHHHHHHHH CS
IBN_N 4 qLnqlekqkPgflsallqilanksldlevRqlAalyLknlItkhWkseeaqrqqqlpeeekelIrnnllnll 75
++++++ P ++++ l+++ +k+ vR++++++L++ ++ +W+ ++ ek +++n++ +l+
gi|22748937|ref|NP_065801.1| 36 FCEEFKEKCPICVPCGLRLA-EKTQVAIVRHFGLQILEHVVKFRWN--------GMSRLEKVYLKNSVMELI 98
56788886699*********.6555899******************........999999****99999887 PP
== domain 2 score: -3.3 bits; conditional E-value: 1.2
HCS-HHHHHHHHHHHHHHH CS
IBN_N 57 qqlpeeekelIrnnllnll 75
q+lp++ + +I ++l + +
gi|22748937|ref|NP_065801.1| 168 QTLPPQRRRDIQQTLTQNM 186
6899*******99998865 PP
Internal pipeline statistics summary:
-------------------------------------
Query sequence(s): 1 (1204 residues)
Target model(s): 13672 (2396357 nodes)
Passed MSV filter: 520 (0.0380339); expected 273.4 (0.02)
Passed bias filter: 319 (0.0233324); expected 273.4 (0.02)
Passed Vit filter: 23 (0.00168227); expected 13.7 (0.001)
Passed Fwd filter: 2 (0.000146284); expected 0.1 (1e-05)
Initial search space (Z): 13672 [actual number of targets]
Domain search space (domZ): 2 [number of targets reported over threshold]
# CPU time: 1.08u 0.16s 00:00:01.24 Elapsed: 00:00:00.41
# Mc/sec: 7037.11
//
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