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# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.0 (March 2010); http://hmmer.org/
# Copyright (C) 2010 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: h01.hmm
# target sequence database: /home/bow/db/hmmer/uniprot_sprot.fasta
# output directed to file: hmmer_cases/text_hmmsearch_spc_noali.out
# per-seq hits tabular output: hmmer_cases/tab_hmmsearch_spc_noali.out
# per-dom hits tabular output: hmmer_cases/domtab_hmmsearch_spc_noali.out
# show alignments in output: no
# sequence reporting threshold: score >= 480
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Pkinase [M=260]
Accession: PF00069.17
Description: Protein kinase domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.4e-147 492.3 0.0 1.1e-72 249.3 0.0 2.1 2 sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS
2.7e-146 490.7 0.0 8.7e-73 249.7 0.0 2.1 2 sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS
2.2e-145 487.7 0.0 4.6e-72 247.4 0.0 2.1 2 sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS
2.5e-145 487.5 0.0 7.5e-72 246.7 0.0 2.1 2 sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS
2.4e-144 484.2 0.0 2.4e-70 241.7 0.0 2.1 2 sp|Q15349|KS6A2_HUMAN Ribosomal protein S6 kinase alpha-2 OS
5e-144 483.2 0.0 3.9e-70 241.0 0.0 2.2 2 sp|P51812|KS6A3_HUMAN Ribosomal protein S6 kinase alpha-3 OS
5e-144 483.2 0.0 3.9e-70 241.0 0.0 2.2 2 sp|P18654|KS6A3_MOUSE Ribosomal protein S6 kinase alpha-3 OS
Domain annotation for each sequence:
>> sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS=Mus musculus GN=Rps6ka2 PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 241.2 0.0 4.6e-75 3.5e-70 1 260 [] 59 318 .. 59 318 .. 0.95
2 ! 249.3 0.0 1.5e-77 1.1e-72 1 260 [] 415 672 .. 415 672 .. 0.97
>> sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS=Rattus norvegicus GN=Rps6ka1 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 239.2 0.0 1.9e-74 1.4e-69 1 258 [. 62 319 .. 62 321 .. 0.94
2 ! 249.7 0.0 1.1e-77 8.7e-73 2 260 .] 419 675 .. 418 675 .. 0.97
>> sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS=Homo sapiens GN=RPS6KA1 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 238.6 0.0 2.9e-74 2.2e-69 1 258 [. 62 319 .. 62 321 .. 0.94
2 ! 247.4 0.0 6e-77 4.6e-72 1 260 [] 418 675 .. 418 675 .. 0.97
>> sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS=Gallus gallus GN=RPS6KA PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 239.0 0.0 2.1e-74 1.6e-69 1 259 [. 80 338 .. 80 339 .. 0.95
2 ! 246.7 0.0 9.8e-77 7.5e-72 1 260 [] 435 692 .. 435 692 .. 0.97
>> sp|Q15349|KS6A2_HUMAN Ribosomal protein S6 kinase alpha-2 OS=Homo sapiens GN=RPS6KA2 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 241.7 0.0 3.2e-75 2.4e-70 1 260 [] 59 318 .. 59 318 .. 0.95
2 ! 240.7 0.0 6.4e-75 4.9e-70 1 260 [] 415 672 .. 415 672 .. 0.97
>> sp|P51812|KS6A3_HUMAN Ribosomal protein S6 kinase alpha-3 OS=Homo sapiens GN=RPS6KA3 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 240.3 0.0 8.7e-75 6.6e-70 1 260 [] 68 327 .. 68 327 .. 0.95
2 ! 241.0 0.0 5.1e-75 3.9e-70 1 260 [] 422 679 .. 422 679 .. 0.97
>> sp|P18654|KS6A3_MOUSE Ribosomal protein S6 kinase alpha-3 OS=Mus musculus GN=Rps6ka3 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 240.3 0.0 8.7e-75 6.6e-70 1 260 [] 68 327 .. 68 327 .. 0.95
2 ! 241.0 0.0 5.1e-75 3.9e-70 1 260 [] 422 679 .. 422 679 .. 0.97
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (260 nodes)
Target sequences: 535698 (190107059 residues)
Passed MSV filter: 21115 (0.0394159); expected 10714.0 (0.02)
Passed bias filter: 15859 (0.0296044); expected 10714.0 (0.02)
Passed Vit filter: 4968 (0.00927388); expected 535.7 (0.001)
Passed Fwd filter: 3953 (0.00737916); expected 5.4 (1e-05)
Initial search space (Z): 535698 [actual number of targets]
Domain search space (domZ): 7 [number of targets reported over threshold]
# CPU time: 39.12u 0.35s 00:00:39.47 Elapsed: 00:00:10.79
# Mc/sec: 4580.89
//
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