File: codeml.ctl

package info (click to toggle)
python-biopython 1.68%2Bdfsg-3
  • links: PTS, VCS
  • area: main
  • in suites: stretch
  • size: 46,860 kB
  • ctags: 13,237
  • sloc: python: 160,306; xml: 93,216; ansic: 9,118; sql: 1,208; makefile: 155; sh: 63
file content (25 lines) | stat: -rw-r--r-- 349 bytes parent folder | download | duplicates (8) 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
 
seqfile = PAML/alignment.phylip
outfile = temp.out
treefile = PAML/species.tree
verbose = 0
CodonFreq = 2
cleandata = 1
fix_blength = 1
NSsites = 0
fix_omega = 0
clock = 0
runmode = 0
fix_kappa = 0
fix_alpha = 1
alpha = 0
method = 0
Malpha = 0
RateAncestor = 0
icode = 0
seqtype = 1
omega = 1
getSE = 0
noisy = 0
Mgene = 0
kappa = 4.54006
model = 0