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|
<?xml version="1.0" encoding="UTF-8"?>
<uniprot xmlns="http://uniprot.org/uniprot" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://uniprot.org/uniprot http://www.uniprot.org/support/docs/uniprot.xsd">
<entry dataset="Swiss-Prot" created="2004-05-10" modified="2012-11-28" version="74">
<accession>O44185</accession>
<name>FLP13_CAEEL</name>
<protein>
<recommendedName>
<fullName>FMRFamide-like neuropeptides 13</fullName>
</recommendedName>
<component>
<recommendedName>
<fullName>SDRPTRAMDSPLIRF-amide</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>AMDSPLIRF-amide</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>AADGAPLIRF-amide 1</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>APEASPFIRF-amide 1</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>AADGAPLIRF-amide 2</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>APEASPFIRF-amide 2</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>ASPSAPLIRF-amide</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>SPSAVPLIRF-amide</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>SAAAPLIRF-amide</fullName>
</recommendedName>
</component>
<component>
<recommendedName>
<fullName>ASSAPLIRF-amide</fullName>
</recommendedName>
</component>
</protein>
<gene>
<name type="primary">flp-13</name>
<name type="ORF">F33D4.3</name>
</gene>
<organism>
<name type="scientific">Caenorhabditis elegans</name>
<dbReference type="NCBI Taxonomy" id="6239"/>
<lineage>
<taxon>Eukaryota</taxon>
<taxon>Metazoa</taxon>
<taxon>Ecdysozoa</taxon>
<taxon>Nematoda</taxon>
<taxon>Chromadorea</taxon>
<taxon>Rhabditida</taxon>
<taxon>Rhabditoidea</taxon>
<taxon>Rhabditidae</taxon>
<taxon>Peloderinae</taxon>
<taxon>Caenorhabditis</taxon>
</lineage>
</organism>
<reference key="1">
<citation type="journal article" date="1998" name="Brain Res. Mol. Brain Res." volume="58" first="103" last="111">
<title>FMRFamide-related gene family in the nematode, Caenorhabditis elegans.</title>
<authorList>
<person name="Nelson L.S."/>
<person name="Kim K."/>
<person name="Memmott J.E."/>
<person name="Li C."/>
</authorList>
<dbReference type="MEDLINE" id="98352130"/>
<dbReference type="PubMed" id="9685599"/>
<dbReference type="DOI" id="10.1016/S0169-328X(98)00106-5"/>
</citation>
<scope>NUCLEOTIDE SEQUENCE [MRNA]</scope>
<scope>DEVELOPMENTAL STAGE</scope>
<source>
<strain>Bristol N2</strain>
</source>
</reference>
<reference key="2">
<citation type="journal article" date="1998" name="Science" volume="282" first="2012" last="2018">
<title>Genome sequence of the nematode C. elegans: a platform for investigating biology.</title>
<authorList>
<consortium name="The C. elegans sequencing consortium"/>
</authorList>
<dbReference type="MEDLINE" id="99069613"/>
<dbReference type="PubMed" id="9851916"/>
<dbReference type="DOI" id="10.1126/science.282.5396.2012"/>
</citation>
<scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
<source>
<strain>Bristol N2</strain>
</source>
</reference>
<reference key="3">
<citation type="journal article" date="2005" name="Biochem. Biophys. Res. Commun." volume="335" first="76" last="86">
<title>Discovering neuropeptides in Caenorhabditis elegans by two dimensional liquid chromatography and mass spectrometry.</title>
<authorList>
<person name="Husson S.J."/>
<person name="Clynen E."/>
<person name="Baggerman G."/>
<person name="De Loof A."/>
<person name="Schoofs L."/>
</authorList>
<dbReference type="PubMed" id="16061202"/>
<dbReference type="DOI" id="10.1016/j.bbrc.2005.07.044"/>
</citation>
<scope>PROTEIN SEQUENCE OF 52-60; 64-73; 76-85; 89-98; 101-110; 114-123; 126-135 AND 138-146</scope>
<scope>AMIDATION AT PHE-60; PHE-73; PHE-85; PHE-98; PHE-110; PHE-123; PHE-135 AND PHE-146</scope>
<source>
<strain>Bristol N2</strain>
</source>
</reference>
<reference key="4">
<citation type="journal article" date="2001" name="Biochem. Biophys. Res. Commun." volume="286" first="1170" last="1176">
<title>Isolation and preliminary biological assessment of AADGAPLIRFamide and SVPGVLRFamide from Caenorhabditis elegans.</title>
<authorList>
<person name="Marks N.J."/>
<person name="Shaw C."/>
<person name="Halton D.W."/>
<person name="Thompson D.P."/>
<person name="Geary T.G."/>
<person name="Li C."/>
<person name="Maule A.G."/>
</authorList>
<dbReference type="MEDLINE" id="21418823"/>
<dbReference type="PubMed" id="11527423"/>
<dbReference type="DOI" id="10.1006/bbrc.2001.5524"/>
</citation>
<scope>PROTEIN SEQUENCE OF 64-73 AND 89-98</scope>
<scope>FUNCTION</scope>
<scope>MASS SPECTROMETRY</scope>
<scope>AMIDATION AT PHE-73 AND PHE-98</scope>
</reference>
<reference key="5">
<citation type="journal article" date="1997" name="Biochem. Biophys. Res. Commun." volume="231" first="591" last="595">
<title>APEASPFIRFamide, a novel FMRFamide-related decapeptide from Caenorhabditis elegans: structure and myoactivity.</title>
<authorList>
<person name="Marks N.J."/>
<person name="Maule A.G."/>
<person name="Geary T.G."/>
<person name="Thompson D.P."/>
<person name="Davis J.P."/>
<person name="Halton D.W."/>
<person name="Verhaert P."/>
<person name="Shaw C."/>
</authorList>
<dbReference type="PubMed" id="9070852"/>
<dbReference type="DOI" id="10.1006/bbrc.1997.6155"/>
</citation>
<scope>PROTEIN SEQUENCE OF 76-85 AND 101-110</scope>
<scope>FUNCTION</scope>
<scope>MASS SPECTROMETRY</scope>
<scope>AMIDATION AT PHE-85 AND PHE-110</scope>
</reference>
<reference key="6">
<citation type="journal article" date="2004" name="J. Comp. Neurol." volume="475" first="540" last="550">
<title>Expression and regulation of an FMRFamide-related neuropeptide gene family in Caenorhabditis elegans.</title>
<authorList>
<person name="Kim K."/>
<person name="Li C."/>
</authorList>
<dbReference type="PubMed" id="15236235"/>
<dbReference type="DOI" id="10.1002/cne.20189"/>
</citation>
<scope>TISSUE SPECIFICITY</scope>
<scope>DEVELOPMENTAL STAGE</scope>
</reference>
<reference key="7">
<citation type="journal article" date="2005" name="J. Neurobiol." volume="65" first="304" last="319">
<title>Role of a FMRFamide-like family of neuropeptides in the pharyngeal nervous system of Caenorhabditis elegans.</title>
<authorList>
<person name="Papaioannou S."/>
<person name="Marsden D."/>
<person name="Franks C.J."/>
<person name="Walker R.J."/>
<person name="Holden-Dye L."/>
</authorList>
<dbReference type="PubMed" id="16187307"/>
<dbReference type="DOI" id="10.1002/neu.20201"/>
</citation>
<scope>FUNCTION</scope>
</reference>
<comment type="function">
<text evidence="1 2 3">FMRFamides and FMRFamide-like peptides are neuropeptides. AADGAPLIRF-amide and APEASPFIRF-amide inhibit muscle tension in somatic muscle. APEASPFIRF-amide is a potent inhibitor of the activity of dissected pharyngeal myogenic muscle system.</text>
</comment>
<comment type="subcellular location">
<subcellularLocation>
<location>Secreted</location>
</subcellularLocation>
</comment>
<comment type="tissue specificity">
<text evidence="4">Each flp gene is expressed in a distinct set of neurons. Flp-13 is expressed in the ASE sensory neurons, the DD motor neurons, the 15, M3 and M5 cholinergic pharyngeal motoneurons, and the ASG, ASK and BAG neurons.</text>
</comment>
<comment type="developmental stage">
<text evidence="4 5">Expressed from the comma stage of embryogenesis, during all larval stages, and in low levels in adults.</text>
</comment>
<comment type="mass spectrometry" mass="1032" method="MALDI" evidence="1">
<location>
<begin position="64"/>
<end position="73"/>
</location>
<location>
<begin position="89"/>
<end position="98"/>
</location>
<text>The measured mass is that of either AADGAPLIRF-amide 1 or AADGAPLIRF-amide 2.</text>
</comment>
<comment type="mass spectrometry" mass="1133.7" method="MALDI" evidence="2">
<location>
<begin position="76"/>
<end position="85"/>
</location>
<location>
<begin position="101"/>
<end position="110"/>
</location>
</comment>
<comment type="similarity">
<text>Belongs to the FARP (FMRFamide related peptide) family.</text>
</comment>
<!-- These elements were obtained from accession Q00955 -->
<comment type="catalytic activity">
<text>ATP + acetyl-CoA + HCO(3)(-) = ADP + phosphate + malonyl-CoA.</text>
</comment>
<comment type="catalytic activity">
<text>ATP + biotin-[carboxyl-carrier-protein] + CO(2) = ADP + phosphate + carboxy-biotin-[carboxyl-carrier-protein].</text>
</comment>
<comment type="cofactor">
<text>Biotin (By similarity).</text>
</comment>
<comment type="cofactor">
<text>Binds 2 manganese ions per subunit (By similarity).</text>
</comment>
<comment type="enzyme regulation">
<text evidence="6">By phosphorylation. The catalytic activity is inhibited by soraphen A, a polyketide isolated from the myxobacterium Sorangium cellulosum and a potent inhibitor of fungal growth.</text>
</comment>
<comment type="pathway">
<text>Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
</comment>
<comment type="subunit">
<text evidence="7 8 9">Homodimer.</text>
</comment>
<comment type="induction">
<text evidence="6 11 12 13">Repressed in presence of fatty acids. Repressed 3-fold by lipid precursors, inositol and choline, and also controlled by regulatory factors INO2, INO4 and OPI1.</text>
</comment>
<comment type="miscellaneous">
<text>Present with 20200 molecules/cell in log phase SD medium.</text>
</comment>
<!-- These elements were obtained from accession Q8W1X2 -->
<comment type="biophysicochemical properties">
<kinetics>
<KM>98 uM for ATP</KM>
<KM>688 uM for pyridoxal</KM>
<Vmax>1.604 mmol/min/mg enzyme</Vmax>
</kinetics>
<phDependence>Optimum pH is 6.0. Active from pH 4.5 to 10.5.</phDependence>
</comment>
<comment type="alternative products">
<event type="alternative splicing"/>
<isoform>
<id>Q8W1X2-1</id>
<name>1</name>
<sequence type="displayed"/>
</isoform>
<isoform>
<id>Q8W1X2-2</id>
<name>2</name>
<sequence type="described" ref="VSP_004654"/>
<note>No experimental confirmation available.</note>
</isoform>
</comment>
<!-- These elements were obtained from accession Q9BZZ5 -->
<comment type="domain">
<text>Two regions, an N-terminal (aa 96-107) and a C-terminal (aa 274-311) are required for binding FGF2.</text>
</comment>
<comment type="PTM">
<text>Acetylation at Lys-251 impairs antiapoptotic function.</text>
</comment>
<comment type="sequence caution">
<conflict type="erroneous initiation">
<sequence resource="EMBL-CDS" id="AAB86528" version="1"/>
</conflict>
<text>Translation N-terminally shortened.</text>
</comment>
<comment type="sequence caution">
<conflict type="frameshift">
<sequence resource="EMBL-CDS" id="AAB86528" version="1"/>
</conflict>
</comment>
<comment type="online information" name="NIEHS-SNPs">
<link uri="http://egp.gs.washington.edu/data/api5/"/>
</comment>
<!-- These elements were obtained from accession P28355 -->
<comment type="RNA editing">
<location>
<position position="156"/>
</location>
<location>
<position position="158"/>
</location>
<location>
<position position="160"/>
</location>
<text evidence="4">Partially edited. RNA editing generates receptor isoforms that differ in their ability to interact with the phospholipase C signaling cascade in a transfected cell line, suggesting that this RNA processing event may contribute to the modulation of serotonergic neurotransmission in the central nervous system.</text>
</comment>
<comment type="polymorphism">
<text>Position 23 is polymorphic; the frequencies in unrelated Caucasians are 0.87 for Cys and 0.13 for Ser.</text>
</comment>
<!-- These elements were obtained from accession Q01718 -->
<comment type="disease">
<text evidence="2 3 4 5 6">Defects in MC2R are the cause of glucocorticoid deficiency type 1 (GCCD1) [MIM:202200]; also known as familial glucocorticoid deficiency type 1 (FGD1). GCCD1 is an autosomal recessive disorder due to congenital insensitivity or resistance to adrenocorticotropin (ACTH). It is characterized by progressive primary adrenal insufficiency, without mineralocorticoid deficiency.</text>
</comment>
<!-- These elements were obtained from accession P11911 -->
<comment type="disruption phenotype">
<text evidence="8">Mice display impaired B-cell development which does not progress pass the progenitor stage.</text>
</comment>
<!-- These elements were obtained from accession Q06811 -->
<comment type="allergen">
<text>Causes an allergic reaction in human.</text>
</comment>
<!-- These elements were obtained from accession P55902 -->
<comment type="toxic dose">
<text evidence="1">LD(50) is 50 ug/kg in mouse by intracerebroventricular injection and 600 ng/g in Blatella germanica.</text>
</comment>
<!-- These elements were obtained from accession P42212 -->
<comment type="biotechnology">
<text evidence="1">Green fluorescent protein has been engineered to produce a vast number of variously colored mutants, fusion proteins, and biosensors. Fluorescent proteins and its mutated allelic forms, blue, cyan and yellow have become a useful and ubiquitous tool for making chimeric proteins, where they function as a fluorescent protein tag. Typically they tolerate N- and C-terminal fusion to a broad variety of proteins. They have been expressed in most known cell types and are used as a noninvasive fluorescent marker in living cells and organisms. They enable a wide range of applications where they have functioned as a cell lineage tracer, reporter of gene expression, or as a measure of protein-protein interactions.</text>
</comment>
<comment type="biotechnology">
<text evidence="1">Can also be used as a molecular thermometer, allowing accurate temperature measurements in fluids. The measurement process relies on the detection of the blinking of GFP using fluorescence correlation spectroscopy.</text>
</comment>
<!-- These elements were obtained from accession O14543 -->
<comment type="pharmaceutical">
<text>Could be used as a possible therapeutic agent for treating rheumatoid arthritis.</text>
</comment>
<!-- These elements were obtained from accession P40939 -->
<comment type="interaction">
<interactant intactId="EBI-356720"/>
<interactant intactId="EBI-746969">
<id>Q9H0R8</id>
<label>GABARAPL1</label>
</interactant>
<organismsDiffer>false</organismsDiffer>
<experiments>4</experiments>
</comment>
<comment type="interaction">
<interactant intactId="EBI-356720"/>
<interactant intactId="EBI-720116">
<id>P60520</id>
<label>GABARAPL2</label>
</interactant>
<organismsDiffer>false</organismsDiffer>
<experiments>3</experiments>
</comment>
<!-- These elements were obtained from accession A6NMY6 -->
<comment type="caution">
<text>Could be the product of a pseudogene. The existence of a transcript at this locus is supported by only one sequence submission (PubMed:2174397).</text>
</comment>
<dbReference type="EMBL" id="AF042400">
<property type="protein sequence ID" value="AAC08951.1"/>
<property type="molecule type" value="mRNA"/>
</dbReference>
<dbReference type="EMBL" id="FO080445">
<property type="protein sequence ID" value="CCD63768.1"/>
<property type="molecule type" value="Genomic_DNA"/>
</dbReference>
<dbReference type="PIR" id="T32553">
<property type="entry name" value="T32553"/>
</dbReference>
<dbReference type="RefSeq" id="NP_501255.1">
<property type="nucleotide sequence ID" value="NM_068854.1"/>
</dbReference>
<dbReference type="UniGene" id="Cel.58"/>
<dbReference type="ProteinModelPortal" id="O44185"/>
<dbReference type="STRING" id="O44185"/>
<dbReference type="EnsemblMetazoa" id="F33D4.3">
<property type="protein sequence ID" value="F33D4.3"/>
<property type="gene ID" value="F33D4.3"/>
</dbReference>
<dbReference type="GeneID" id="177547"/>
<dbReference type="KEGG" id="cel:CELE_F33D4.3"/>
<dbReference type="UCSC" id="F33D4.3">
<property type="organism name" value="c. elegans"/>
</dbReference>
<dbReference type="CTD" id="177547"/>
<dbReference type="WormBase" id="F33D4.3">
<property type="protein sequence ID" value="CE17033"/>
<property type="gene ID" value="WBGene00001456"/>
<property type="gene designation" value="flp-13"/>
</dbReference>
<dbReference type="eggNOG" id="NOG70956"/>
<dbReference type="GeneTree" id="ENSGT00570000079955"/>
<dbReference type="HOGENOM" id="HOG000018010"/>
<dbReference type="InParanoid" id="O44185"/>
<dbReference type="OMA" id="VAIQAFD"/>
<dbReference type="NextBio" id="897310"/>
<dbReference type="ArrayExpress" id="O44185"/>
<dbReference type="GO" id="GO:0005576">
<property type="term" value="C:extracellular region"/>
<property type="evidence" value="IC:UniProtKB"/>
</dbReference>
<dbReference type="GO" id="GO:0007218">
<property type="term" value="P:neuropeptide signaling pathway"/>
<property type="evidence" value="IDA:UniProtKB"/>
</dbReference>
<dbReference type="InterPro" id="IPR002544">
<property type="entry name" value="FMRFamid-related_peptide-like"/>
</dbReference>
<dbReference type="Pfam" id="PF01581">
<property type="entry name" value="FARP"/>
<property type="match status" value="9"/>
</dbReference>
<proteinExistence type="evidence at protein level"/>
<keyword id="KW-0027">Amidation</keyword>
<keyword id="KW-0165">Cleavage on pair of basic residues</keyword>
<keyword id="KW-0181">Complete proteome</keyword>
<keyword id="KW-0903">Direct protein sequencing</keyword>
<keyword id="KW-0527">Neuropeptide</keyword>
<keyword id="KW-1185">Reference proteome</keyword>
<keyword id="KW-0677">Repeat</keyword>
<keyword id="KW-0964">Secreted</keyword>
<keyword id="KW-0732">Signal</keyword>
<feature type="signal peptide" status="potential">
<location>
<begin position="1"/>
<end position="17"/>
</location>
</feature>
<feature type="propeptide" status="potential" id="PRO_0000009556" evidence="7">
<location>
<begin position="18"/>
<end position="43"/>
</location>
</feature>
<feature type="peptide" description="SDRPTRAMDSPLIRF-amide" status="potential" id="PRO_0000248047" evidence="5">
<location>
<begin position="46"/>
<end position="60"/>
</location>
</feature>
<feature type="peptide" description="AMDSPLIRF-amide" id="PRO_0000311849" evidence="6">
<location>
<begin position="52"/>
<end position="60"/>
</location>
</feature>
<feature type="peptide" description="AADGAPLIRF-amide 1" id="PRO_0000009557" evidence="1 6">
<location>
<begin position="64"/>
<end position="73"/>
</location>
</feature>
<feature type="peptide" description="APEASPFIRF-amide 1" id="PRO_0000009558" evidence="2 6">
<location>
<begin position="76"/>
<end position="85"/>
</location>
</feature>
<feature type="peptide" description="AADGAPLIRF-amide 2" id="PRO_0000009559" evidence="1 6">
<location>
<begin position="89"/>
<end position="98"/>
</location>
</feature>
<feature type="peptide" description="APEASPFIRF-amide 2" id="PRO_0000248048" evidence="2 6">
<location>
<begin position="101"/>
<end position="110"/>
</location>
</feature>
<feature type="peptide" description="ASPSAPLIRF-amide" id="PRO_0000248049" evidence="6">
<location>
<begin position="114"/>
<end position="123"/>
</location>
</feature>
<feature type="peptide" description="SPSAVPLIRF-amide" id="PRO_0000248050" evidence="6">
<location>
<begin position="126"/>
<end position="135"/>
</location>
</feature>
<feature type="peptide" description="SAAAPLIRF-amide" id="PRO_0000248051" evidence="6">
<location>
<begin position="138"/>
<end position="146"/>
</location>
</feature>
<feature type="peptide" description="ASSAPLIRF-amide" status="potential" id="PRO_0000248052" evidence="5">
<location>
<begin position="149"/>
<end position="157"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="6">
<location>
<position position="60"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="1 6">
<location>
<position position="73"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="2 6">
<location>
<position position="85"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="1 6">
<location>
<position position="98"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="2 6">
<location>
<position position="110"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="6">
<location>
<position position="123"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="6">
<location>
<position position="135"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" evidence="6">
<location>
<position position="146"/>
</location>
</feature>
<feature type="modified residue" description="Phenylalanine amide" status="potential" evidence="5">
<location>
<position position="157"/>
</location>
</feature>
<evidence key="1" type="ECO:0000006">
<source>
<dbReference type="PubMed" id="11527423"/>
</source>
</evidence>
<evidence key="2" type="ECO:0000006">
<source>
<dbReference type="PubMed" id="9070852"/>
</source>
</evidence>
<evidence key="3" type="ECO:0000006">
<source>
<dbReference type="PubMed" id="16187307"/>
</source>
</evidence>
<evidence key="4" type="ECO:0000006">
<source>
<dbReference type="PubMed" id="15236235"/>
</source>
</evidence>
<evidence key="5" type="ECO:0000006">
<source>
<dbReference type="PubMed" id="9685599"/>
</source>
</evidence>
<evidence key="6" type="ECO:0000006">
<source>
<dbReference type="PubMed" id="16061202"/>
</source>
</evidence>
<evidence key="7" type="ECO:0000001"/>
<sequence length="160" mass="17736" checksum="BE4C24E9B85FCD11" modified="1998-06-01" version="1" precursor="true">
MMTSLLTISMFVVAIQAFDSSEIRMLDEQYDTKNPFFQFLENSKRSDRPTRAMDSPLIRF
GKRAADGAPLIRFGRAPEASPFIRFGKRAADGAPLIRFGRAPEASPFIRFGKRASPSAPL
IRFGRSPSAVPLIRFGRSAAAPLIRFGRASSAPLIRFGRK
</sequence>
</entry>
<copyright>
Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms
Distributed under the Creative Commons Attribution-NoDerivs License
</copyright>
</uniprot>
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