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test_FSSP
Read in 1cnv.fssp
...1cnv.fssp read
head_rec.author ['M.Hennig']
head_rec.compnd ['concanavalin', 'b']
head_rec.database 2645
head_rec.header SEED PROTEIN
head_rec.nalign 214
head_rec.pdbid 1cnv
head_rec.seqlength 283
head_rec.source (canavalia ensiformis) jack bean
len(sum_rec) = 214; head_rec.nalign = 214
The above two numbers should be the same
Create a multiple alignment instance using Bio.Align
...Done
Filter by name
name list ['2hvm0', '1hvq0', '1nar0', '2ebn0']
2 : 2: 1cnv 2hvm 39.2 1.7 270 273 42 0 0 10 S hevamine (chitinaseLYSOZYME)
3 : 3: 1cnv 1hvq 39.0 1.7 271 273 41 0 0 10 S hevamine a
5 : 5: 1cnv 1nar 20.0 3.1 246 289 13 0 0 27 S Narbonin
11 : 11: 1cnv 2ebn 16.9 3.0 215 285 13 0 0 25 S Endo-beta-n-acetylglucosaminidase f1 (endoglycosidase f
2 : Ps
3 : Ps
5 : ..
11 : ..
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