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<!-- ============================================
::DATATOOL:: Generated from "seqfeat.asn"
::DATATOOL:: by application DATATOOL version 2.4.4
::DATATOOL:: on 09/28/2012 23:04:43
============================================ -->
<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-BioSource"
================================================= -->
<!--
**********************************************************************
NCBI BioSource
by James Ostell, 1994
version 3.0
**********************************************************************
-->
<!-- Elements used by other modules:
BioSource,
SubSource -->
<!-- Elements referenced from other modules:
Org-ref FROM NCBI-Organism -->
<!-- ============================================ -->
<!--
********************************************************************
BioSource gives the source of the biological material
for sequences
********************************************************************
-->
<!ELEMENT BioSource (
BioSource_genome?,
BioSource_origin?,
BioSource_org,
BioSource_subtype?,
BioSource_is-focus?,
BioSource_pcr-primers?)>
<!-- biological context -->
<!ELEMENT BioSource_genome (%INTEGER;)>
<!ATTLIST BioSource_genome value (
unknown |
genomic |
chloroplast |
chromoplast |
kinetoplast |
mitochondrion |
plastid |
macronuclear |
extrachrom |
plasmid |
transposon |
insertion-seq |
cyanelle |
proviral |
virion |
nucleomorph |
apicoplast |
leucoplast |
proplastid |
endogenous-virus |
hydrogenosome |
chromosome |
chromatophore
) #IMPLIED >
<!ELEMENT BioSource_origin (%INTEGER;)>
<!--
natural - normal biological entity
natmut - naturally occurring mutant
mut - artificially mutagenized
artificial - artificially engineered
synthetic - purely synthetic
-->
<!ATTLIST BioSource_origin value (
unknown |
natural |
natmut |
mut |
artificial |
synthetic |
other
) #IMPLIED >
<!ELEMENT BioSource_org (Org-ref)>
<!ELEMENT BioSource_subtype (SubSource*)>
<!-- to distinguish biological focus -->
<!ELEMENT BioSource_is-focus EMPTY>
<!ELEMENT BioSource_pcr-primers (PCRReactionSet)>
<!ELEMENT PCRReactionSet (PCRReaction*)>
<!ELEMENT PCRReaction (
PCRReaction_forward?,
PCRReaction_reverse?)>
<!ELEMENT PCRReaction_forward (PCRPrimerSet)>
<!ELEMENT PCRReaction_reverse (PCRPrimerSet)>
<!ELEMENT PCRPrimerSet (PCRPrimer*)>
<!ELEMENT PCRPrimer (
PCRPrimer_seq?,
PCRPrimer_name?)>
<!ELEMENT PCRPrimer_seq (PCRPrimerSeq)>
<!ELEMENT PCRPrimer_name (PCRPrimerName)>
<!ELEMENT PCRPrimerSeq (#PCDATA)>
<!ELEMENT PCRPrimerName (#PCDATA)>
<!ELEMENT SubSource (
SubSource_subtype,
SubSource_name,
SubSource_attrib?)>
<!ELEMENT SubSource_subtype (%INTEGER;)>
<!--
lat-lon - +/- decimal degrees
collection-date - DD-MMM-YYYY format
collected-by - name of person who collected the sample
identified-by - name of person who identified the sample
fwd-primer-seq - sequence (possibly more than one; semicolon-separated)
rev-primer-seq - sequence (possibly more than one; semicolon-separated)
-->
<!ATTLIST SubSource_subtype value (
chromosome |
map |
clone |
subclone |
haplotype |
genotype |
sex |
cell-line |
cell-type |
tissue-type |
clone-lib |
dev-stage |
frequency |
germline |
rearranged |
lab-host |
pop-variant |
tissue-lib |
plasmid-name |
transposon-name |
insertion-seq-name |
plastid-name |
country |
segment |
endogenous-virus-name |
transgenic |
environmental-sample |
isolation-source |
lat-lon |
collection-date |
collected-by |
identified-by |
fwd-primer-seq |
rev-primer-seq |
fwd-primer-name |
rev-primer-name |
metagenomic |
mating-type |
linkage-group |
haplogroup |
whole-replicon |
phenotype |
altitude |
other
) #IMPLIED >
<!ELEMENT SubSource_name (#PCDATA)>
<!-- attribution/source of this name -->
<!ELEMENT SubSource_attrib (#PCDATA)>
|
