1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704
|
<!-- ============================================================= -->
<!-- MODULE: Default Element Classes Module -->
<!-- VERSION: 2.0 -->
<!-- DATE: August 2004 -->
<!-- -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- PUBLIC DOCUMENT TYPE DEFINITION -->
<!-- TYPICAL INVOCATION -->
<!--
"-//NLM//DTD Default Element Classes Module v2.0 20040830//EN"
Delivered as file "default-classes.ent" -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- SYSTEM: Journal Archiving and Interchange DTD of the -->
<!-- Archiving and Interchange DTD Suite -->
<!-- -->
<!-- PURPOSE: To declare the Parameter Entities (PEs) used to -->
<!-- define the default element classes. Classes are -->
<!-- OR-groups of elements that are defined together -->
<!-- to be used in mixes and in Element Declarations. -->
<!-- -->
<!-- Note: Since PEs must be declared before they -->
<!-- are used, this module must be called before all -->
<!-- content modules that declare elements, and after -->
<!-- the class customization module (if any). -->
<!-- -->
<!-- CONTAINS: PEs that define the element classes to be used -->
<!-- in the Journal Archive and Interchange DTD Suite -->
<!-- modules. -->
<!-- -->
<!-- CREATED FOR: -->
<!-- Digital Archive of Journal Articles -->
<!-- National Center for Biotechnology Information -->
<!-- (NCBI) -->
<!-- National Library of Medicine (NLM) -->
<!-- -->
<!-- ORIGINAL CREATION DATE: -->
<!-- August 2004 -->
<!-- -->
<!-- CREATED BY: Deborah Lapeyre (Mulberry Technologies, Inc.) -->
<!-- B. Tommie Usdin (Mulberry Technologies, Inc.) -->
<!-- -->
<!-- Suggestions for refinements and enhancements to -->
<!-- this DTD should be sent in email to: -->
<!-- archive-dtd@ncbi.nlm.nih.gov -->
<!-- ============================================================= -->
<!-- ============================================================= -->
<!-- DTD VERSION/CHANGE HISTORY -->
<!-- ============================================================= -->
<!--
Version Reason/Occasion (who) vx.x (yyyy-mm-dd)
=============================================================
Version 2.0 (DAL/BTU) v2.0 (2004-08-30)
Major requirement changes led to the new release, producing
DTD version "2.0":
a) The splitting of the Archival and Interchange Tag Set
DTDs into three DTDs from two: an authoring DTD, an
archive regularization and interchange DTD (the
current Blue Publishing DTD), and a preservationist
archive DTD (the current Green Archiving and Interchange
DTD).
b) AIT Working Group suggestions from the June 04 meeting
and June/July 2004 followup discussions
c) Suite remodularization to meet new (and newly articulated)
modularization requirements
d) New or renamed classes and mixes to make modifications
easier and more consistent
13. ACCESS CLASS
### Customization Alert ###
a. Took <ext-link> out of -%access.class;. It did not belong.
It belongs in -%address-link.class;
12. PARA CLASS
### Customization Alert ###
a. Deleted -%para.class;
b. Its place in the definition of the Paragraph <p> element
will be taken by the -%p-elements; entity.
c. Its place in other mixes will be taken by the combination
of:
- %just-para.class; and
- %rest-of-para.class;
11. LINK CLASSES
### Customization Alert ###
a. Deleted the following classes:
- %link.class;
- %inpara-address;
- %ext-links.class;
b. Replaced above with four link classes:
- %address-link.class; (the links used in addresses)
- %fn-link.class; (just fn)
- %simple-link.class; (the internal links, same)
- %article-link.class; (links for journal article)
as follows:
- All occurrences of -%ext-links.class; replaced with
the new class %address-links.class;
- All occurrences of -%link.class; replaced with some
combination of the new link classes just named.
These were not usually DTD changes, just parameterization
changes.
10. PERSON NAME/STRING-NAME - Allowed a looser name model
<string-name> to be used anywhere <name> is used. This
includes:
- Inside %references.class;
(Therefore added to <citation>, <product>,
<related-article>)
- New Parameter Entity %name.class; for types
of names: <name>, <string-name>, <collab>
- Inside %contrib-model; (which uses %name.class; thus
adding <string-name> to <contributor>)
- Inside <person-group> (in %name.class;)
9. ROLE ELEMENT - Was added to the default references class
%references.class;
8. DATES
a. Added new class -%date-parts.class; to hold all the
potential components of date, such as <year>, <day>,
etc.
b. Added <string-date> to default -%date.class;
7. NEW IDENTIFICATION ELEMENTS
a. Added three new identification elements:
- ISSUE ID = new element for an identifier such as a DOI (as
opposed to an <issue> Issue Number) associated with a
journal issue
- ISSUE TITLE = new element for a theme or special issue title
- VOLUME ID = new element for a theme or special issue title
b. These identification elements were:
- Added to <article-meta>
- Added to %references.class; (thus to <citation>,
<related-article>, and <product>)
- Defined in common module
- Added to several new Parameter Entities that are
named %nnn-elements; (Such Parameter Entities hold
the elements that may be mixed with #PCDATA inside
the element named "nnn".)
6. REFERENCES.CLASS - Added the following elements to the
- %references.class;:
- <issue-id>
- <issue-title>
- <page-range>
- <role>
- <string-name>
- <volume-id>
Thus adding them to:
- <citation>
- <related-article>
- <product>
5. DISPLAY BACK MATTER - Added <attrib> to %display-back-matter;
thus adding it to the following elements:
- <array>
- <boxed-text>
- <chem-struct-wrapper>
- <disp-quote>
- <fig>
- <graphic>
- <preformat>
- <table-wrap>
- <verse-group>
4. ADDRESS ELEMENTS CLASS
### Customization Alert ###
- Redefined to remove <email> and <uri>
3. MAKE CLASS NAMES EXPLICIT - Some classes did not have the
".class" suffix. Renamed such classes to add the suffix.
### Customization Alert ###
- %address-elements; ==> to -%address.class;
- %contrib-info; ==> -%contrib-info.class;
(uri added to class)
- %display-back-matter; ==> -%display-back-matter.class;
- %block-math; ==> -%block-math.class;
- %inline-math; ==> -%inline-math.class;
2. NEW CLASSES - To correct potential classing problems, added
the following new Parameter Entities and added a few new
comments:
New Classes:
- %app.class;
- %corresp.class;
- %def.class;
- %degree.class;
- %fn-link.class;
- %front-back.class; and %sec-back.class;
changed the following to use them
%doc-back-matter-mix;
%sec-back-matter-mix;
- %just-base-display.class;
and used it in
%chem-struct-wrapper-model;
%array-model;
%fig-group-model;
- %just-para.class;
used in <author-comment>, <bio>, <def>,
<caption>, %fig-model;
- %just-table.class;
- %kwd.class;
- %back.class;
- %front-back.class;
- %ref-list.class;
- %sec-back.class;
- %table-foot.class;
- %tbody.class;
1. Created this module as version "v2.0 20040830" -->
<!-- ============================================================= -->
<!-- CLASSES FOR COMMON ELEMENTS (%common.ent;) -->
<!-- ============================================================= -->
<!-- ADDRESS CLASS ELEMENTS -->
<!-- Potential element components of an address;
not a proper class -->
<!ENTITY % address.class
"addr-line | country | fax |
institution | phone " >
<!-- CITATION CLASS ELEMENTS -->
<!-- Reference to an external document, as used
within, for example, the text of a
paragraph -->
<!ENTITY % citation.class
"citation" >
<!-- DEFINITION CLASS ELEMENTS -->
<!-- Definitions and other elements to match
with terms and abbreviations -->
<!ENTITY % def.class "def" >
<!-- DEGREE CLASS -->
<!-- The academic or professional degrees that
accompany a person's name -->
<!ENTITY % degree.class "degrees" >
<!-- IDENTIFIER CLASS ELEMENTS -->
<!-- DOIs and other identifiers are used by
publishers at many levels, for example for
an <abstract> or a <figure>. -->
<!ENTITY % id.class "object-id" >
<!-- LABEL CLASS -->
<!-- The label element, used to hold the number
or character of a labeled object such as a
table or footnote -->
<!ENTITY % label.class "label" >
<!-- NAMES CLASS -->
<!-- The elements used to name the personal names
for individuals and the collaboration names
for groups -->
<!ENTITY % name.class "collab | name | string-name" >
<!-- PERSONAL NAMES CLASS -->
<!-- The element components of a person's name,
for the name of a contributor -->
<!ENTITY % person-name.class
"given-names | prefix | surname | suffix" >
<!-- ============================================================= -->
<!-- ARTICLE METADATA CLASSES %articlemeta.ent; -->
<!-- ============================================================= -->
<!-- CONTRIBUTOR INFORMATION -->
<!-- Metadata about a contributor -->
<!ENTITY % contrib-info.class
"address | aff | author-comment | bio |
email | etal | ext-link | on-behalf-of |
role | uri | xref" >
<!-- CONFERENCE CLASS -->
<!-- The element components of the description
of a conference; not a proper class -->
<!ENTITY % conference.class
"conf-date | conf-name | conf-num |
conf-loc | conf-sponsor | conf-theme |
conf-acronym" >
<!-- CORRESPONDING AUTHOR CLASS -->
<!-- Elements associated with the corresponding
author -->
<!ENTITY % corresp.class
"corresp" >
<!-- DATE CLASS ELEMENTS -->
<!-- Dates and other matters of history -->
<!ENTITY % date.class "date | string-date" >
<!-- DATE PARTS CLASS ELEMENTS -->
<!-- Components of date-style elements -->
<!ENTITY % date-parts.class
"day | month | season | year" >
<!-- KEYWORD CLASS ELEMENTS -->
<!-- Keywords and any keyword-synonyms -->
<!ENTITY % kwd.class "kwd" >
<!-- ============================================================= -->
<!-- BACK MATTER CLASSES (%backmatter.ent;) -->
<!-- ============================================================= -->
<!-- JUST APPENDIX CLASS -->
<!-- The appendix and only the appendix -->
<!ENTITY % app.class
"app" >
<!-- BACK MATTER CLASS -->
<!-- Ancillary elements, typically used in the
back matter of an article, section, etc. -->
<!ENTITY % back.class "ack | app-group | bio | fn-group |
glossary | ref-list" >
<!-- FRONT MATTER CLASS -->
<!-- Ancillary elements, typically used in the
front matter of an article, book, etc. . -->
<!ENTITY % front.class "ack | bio | fn-group | glossary" >
<!-- FRONT AND BACK CLASS -->
<!-- Ancillary elements, typically used in the
front or back matter of an article -->
<!ENTITY % front-back.class
"notes" >
<!-- SECTION BACK MATTER CLASS -->
<!-- Ancillary elements, typically used in the
back matter of a section, etc. -->
<!ENTITY % sec-back.class
"fn-group | glossary | ref-list" >
<!-- JUST REF-LIST CLASS -->
<!-- The reference list and only the reference
list (The element <ref-list> is defined in
%references.ent;.) -->
<!ENTITY % ref-list.class
"ref-list" >
<!-- ============================================================= -->
<!-- DISPLAY CLASSES -->
<!-- ============================================================= -->
<!-- ACCESSIBILITY CLASS ELEMENTS -->
<!-- Elements added to make it easier to process
journal articles in ways that are more
accessible to people and devices with special
needs, for example the visually handicapped.
<alt-text> is a short phrase description of
an objects, <long-desc> is a more complete
description of the content or intent of an
object, and the <ext-link> in this grouping
would point to an alternate form of the
object. -->
<!ENTITY % access.class "alt-text | long-desc" >
<!-- DISPLAY CLASS ELEMENTS -->
<!-- Graphical or other image-related elements.
The display elements may occur within
the text of a table cell or paragraph
although they are typically at the same
hierarchical level as a paragraph. -->
<!ENTITY % block-display.class
"array | boxed-text | chem-struct |
chem-struct-wrapper | fig | fig-group |
graphic | media | preformat |
supplementary-material | table-wrap |
table-wrap-group" >
<!-- CAPTION DISPLAY ELEMENTS -->
<!-- Basic figure display elements -->
<!ENTITY % caption.class
"caption" >
<!-- DISPLAY ELEMENT BACK MATTER ELEMENTS -->
<!-- Miscellaneous stuff at the end of a display
element such as a figure or a boxed text
element such as a sidebar -->
<!ENTITY % display-back-matter.class
"attrib | copyright-statement" >
<!-- FIGURE DISPLAY ELEMENTS -->
<!-- Basic figure display elements -->
<!ENTITY % fig-display.class
"fig" >
<!-- INLINE DISPLAY CLASS ELEMENTS -->
<!-- Non-block display elements that set or
display inline with the text -->
<!ENTITY % inline-display.class
"inline-graphic | private-char" >
<!-- MOST BASIC DISPLAY ELEMENTS -->
<!-- Just the few display elements that are
simple display objects: a picture, a movie,
a sound file. -->
<!ENTITY % just-base-display.class
"graphic | media" >
<!-- SIMPLE DISPLAY ELEMENTS -->
<!-- The simplest and most basic of the Display
Class elements, which may be allowed in many
places, for example, inside other Display
Class elements or inside the cell of a
Table -->
<!ENTITY % simple-display.class
"array | chem-struct | graphic | media |
preformat" >
<!-- SIMPLE TABLE DISPLAY ELEMENTS -->
<!-- Very similar to the simple-display.class, but
Table Wrappers <table-wrap> should contain
<table>s, <oasis:table>s, etc., not
arrays. -->
<!ENTITY % simple-intable-display.class
"chem-struct | graphic | media | preformat" >
<!-- ============================================================= -->
<!-- FORMAT CLASSES (%format.ent;) -->
<!-- ============================================================= -->
<!-- APPEARANCE CLASS ELEMENTS -->
<!-- Names those elements (inherited from the
XHTML table DTD that are only concerned with
appearance, not with structure or content.
Use of these elements is to be discouraged.-->
<!ENTITY % appearance.class
"font | hr" >
<!-- FORCED BREAK FORMATTING CLASS ELEMENTS -->
<!-- Element to force a formatting break such as
a line break -->
<!ENTITY % break.class "break" >
<!-- EMPHASIS/RENDITION ELEMENTS -->
<!-- Elements concerning with marking the location
of typographical emphasis (highlighting)
DTD DESIGN NOTE: There are no emphasis
elements for <fractur>, <openface> (black
board), <script>, etc. because this DTD
recommends the use of the STIX extensions
to accomplish this, as soon as they are
available. -->
<!ENTITY % emphasis.class
"bold | italic | monospace |
overline | overline-start | overline-end |
sc | strike | underline |
underline-start | underline-end " >
<!-- UP/DOWN RENDITION ELEMENTS -->
<!ENTITY % subsup.class "sub | sup" >
<!-- ============================================================= -->
<!-- LINK CLASSES (%link.ent;) -->
<!-- ============================================================= -->
<!-- ADDRESS LINK CLASS ELEMENTS -->
<!-- Link elements that can be used inside
addresses. This is essentially the three
generic external links.
(Note: in earlier releases, this Parameter
Entity was named %address-elements;,
although it functioned as a class.) -->
<!ENTITY % address-link.class
"email | ext-link | uri" >
<!-- JOURNAL ARTICLE LINK CLASS ELEMENTS -->
<!-- Links used inside journal articles, to point
to related material -->
<!ENTITY % article-link.class
"inline-supplementary-material |
related-article" >
<!-- FOOTNOTE LINKS CLASS -->
<!-- Only the most basic, internal links -->
<!ENTITY % fn-link.class
"fn" >
<!-- RELATED ARTICLE LINKS CLASS -->
<!-- For using <related-article> at the paragraph
level -->
<!ENTITY % related-article.class
"related-article" >
<!-- SIMPLE LINKS/CROSS-REFERENCES CLASS -->
<!-- The smaller and simpler linking elements
that might be inside, for example, a
Keyword <kwd> -->
<!ENTITY % simple-link.class
"fn | target | xref" >
<!-- ============================================================= -->
<!-- LIST CLASSES (%list.ent;) -->
<!-- ============================================================= -->
<!-- LIST CLASS ELEMENTS -->
<!-- All the types of lists that may occur
as part of the text, therefore excluding
Bibliographic Reference Lists <ref-list> -->
<!ENTITY % list.class "def-list | list" >
<!-- ============================================================= -->
<!-- MATH CLASSES (%math.ent;) -->
<!-- ============================================================= -->
<!-- MATHEMATICAL EXPRESSIONS AND FORMULAE MIX -->
<!ENTITY % block-math.class
"disp-formula" >
<!-- INLINE MATHEMATICAL EXPRESSIONS MIX -->
<!ENTITY % inline-math.class
"inline-formula" >
<!-- MATHEMATICAL EXPRESSIONS -->
<!ENTITY % math.class "tex-math | mml:math" >
<!-- ============================================================= -->
<!-- PARAGRAPH CLASSES (%para.ent;) -->
<!-- ============================================================= -->
<!-- REST OF PARAGRAPH CLASS -->
<!-- Information for the reader that is at the
same structural level as a Paragraph.
Contains all paragraph-level objects that are
not also used inside tables and excepting
also the paragraph element itself -->
<!ENTITY % rest-of-para.class
"ack | disp-quote | speech | statement |
verse-group" >
<!-- IN TABLE PARAGRAPH CLASS -->
<!-- The simpler of the paragraph-level elements
that might be found inside a table cell -->
<!ENTITY % intable-para.class
"disp-quote | speech | statement |
verse-group" >
<!-- JUST PARAGRAPH CLASS -->
<!-- To hold the Paragraph element, alone. -->
<!ENTITY % just-para.class
"p" >
<!-- ============================================================= -->
<!-- PHRASE CLASSES (%phrase.ent;) -->
<!-- ============================================================= -->
<!-- PHRASE CLASS ELEMENTS -->
<!-- Small inline elements, that surround a word
or phrase in the text because the subject
(content) should be identified as something
special or different -->
<!ENTITY % phrase.class "abbrev | named-content" >
<!-- ============================================================= -->
<!-- REFERENCES CLASSES (%references.ent;) -->
<!-- ============================================================= -->
<!-- BIBLIOGRAPHIC REFERENCE (CITATION) CLASS -->
<!-- The elements that may be included inside a
Citation (bibliographic reference) -->
<!ENTITY % references.class
"access-date | annotation | article-title |
collab | comment |
conf-date | conf-loc | conf-name |
day | edition | email | elocation-id |
etal | ext-link | fpage | gov | isbn |
issn | issue | issue-id | issue-title |
lpage | month | name | object-id |
page-count | page-range |
patent | person-group | pub-id |
publisher-loc | publisher-name |
role | season |
series | source | std | string-name |
supplement | time-stamp | trans-source |
trans-title | uri |
volume | volume-id | year" >
<!-- JUST REF-LIST CLASS -->
<!-- The reference list and only the reference
list -->
<!ENTITY % ref-list.class
"ref-list" >
<!-- ============================================================= -->
<!-- SECTION CLASS (%section.ent;) -->
<!-- ============================================================= -->
<!-- SECTION CLASS ELEMENTS -->
<!-- Information for the reader that is at the
same structural level as a Section, which is
a headed structure full of smaller elements
such as paragraphs. -->
<!ENTITY % sec.class "sec" >
<!-- ============================================================= -->
<!-- TABLE MODEL CLASSES -->
<!-- ============================================================= -->
<!-- JUST TABLE CLASS -->
<!-- To include just a table <tale-wrap>
element -->
<!ENTITY % just-table.class
"table-wrap" >
<!-- TABLE CLASS ELEMENTS -->
<!-- Elements that will be used to contain the
rows and columns inside the Table Wrapper
element <table-wrap>. The following elements
can be set up for inclusion:
XHTML Table Model table -->
<!ENTITY % table.class "table" >
<!-- TABLE FOOT CLASS -->
<!-- Elements to include at the end of a table
in the table. -->
<!ENTITY % table-foot.class
"table-wrap-foot" >
<!-- TBODY CLASS -->
<!-- To include just a table <tale-wrap>
element -->
<!ENTITY % tbody.class "tbody" >
<!-- ================== End Journal Suite Default Classes ======= -->
|