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#!/usr/bin/env python
"""Small script to test timing of getting records from a BioSQL database.
"""
from __future__ import print_function
import time
# set up the connection
from BioSQL import BioSeqDatabase
__docformat__ = "restructuredtext en"
server = BioSeqDatabase.open_database(host="192.168.0.192", user="root",
passwd="", db="test_biosql")
db = server["embl_rod"]
# -- do the fasta-only timing part
start_time = time.time()
num_records = 0
for junk_id, record in db.items():
num_records += 1
sequence = record.seq.data
d = record.description
i = record.id
n = record.name
end_time = time.time()
elapsed_time = end_time - start_time
print("Fasta")
print("\tDid %s records in %s seconds for\n\t%f records per second" %
(num_records, elapsed_time, float(num_records) / float(elapsed_time)))
# -- do the "EMBL" timing part
start_time = time.time()
num_records = 0
for junk_id, record in db.items():
num_records += 1
sequence = record.seq.data
d = record.description
i = record.id
n = record.name
features = record.features
anns = record.annotations
dates = record.dates
species = record.species
keywords = record.keywords
end_time = time.time()
elapsed_time = end_time - start_time
print("EMBL")
print("\tDid %s records in %s seconds for\n\t%f records per second" %
(num_records, elapsed_time, float(num_records) / float(elapsed_time)))
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