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|
BLASTP 2.2.2 [Jan-08-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|29294651|ref|NP_803187.1| dicer1 [Homo sapiens]
(1922 letters)
Database: NC_000964
4105 sequences; 1,221,421 total letters
Searching.........done
Score E
Sequences producing significant alignments: (bits) Value
gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis... 69 3e-12
gi|16080962|ref|NP_391790.1| ATP-dependent RNA helicase [Bacillu... 48 6e-06
gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase [Bacillu... 42 3e-04
gi|16077525|ref|NP_388339.1| hypothetical protein BSU04580 [Baci... 42 3e-04
gi|16079569|ref|NP_390393.1| hypothetical protein BSU25140 [Baci... 39 0.002
gi|16077123|ref|NP_387936.1| transcription-repair coupling facto... 38 0.007
gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillu... 37 0.009
gi|16080600|ref|NP_391427.1| late competence protein [Bacillus s... 36 0.025
gi|16077810|ref|NP_388624.1| hypothetical protein BSU07430 [Baci... 35 0.042
gi|16078982|ref|NP_389803.1| hypothetical protein BSU19220 [Baci... 33 0.12
gi|16079514|ref|NP_390338.1| hypothetical protein BSU24580 [Baci... 31 0.80
gi|16079359|ref|NP_390183.1| ATP-dependent DNA helicase [Bacillu... 30 1.0
gi|16079280|ref|NP_390104.1| hypothetical protein BSU22220 [Baci... 29 2.3
gi|16081087|ref|NP_391915.1| transcriptional regulator (NtrC/Nif... 28 5.2
gi|16080045|ref|NP_390871.1| pullulanase [Bacillus subtilis subs... 27 8.8
>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis
subsp. subtilis str. 168]
Length = 249
Score = 68.9 bits (167), Expect = 3e-12
Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 36/176 (20%)
Query: 1663 ISGFENFEKKINYRFKNKAYLLQAFTHASY---HYNTITDCYQRLEFLGDAILDYLITKH 1719
+ F+ F+++I+ F+N+ L QAFTH+SY H + +RLEFLGDA+L+ I++
Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76
Query: 1720 LYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEK 1779
L+ S G LT LR+A+V SLA + + D V +
Sbjct: 77 LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF---------------GDLVLLG-KG 120
Query: 1780 NEMQGMXXXXXXXXXXXXXXXXXXVPKAMGDIFESLAGAIYMDSGMS-LETVWQVY 1834
EM G P + D+FE+ GA+Y+D G+ +E+ +VY
Sbjct: 121 EEMTG----------------GRKRPALLADVFEAFIGALYLDQGLEPVESFLKVY 160
Score = 37.7 bits (86), Expect = 0.007
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRL 1359
ERLE LGD+ L+ I+ +LF YP EG L+ +R+ V +L L
Sbjct: 59 ERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSL 105
>gi|16080962|ref|NP_391790.1| ATP-dependent RNA helicase [Bacillus
subtilis subsp. subtilis str. 168]
Length = 479
Score = 47.8 bits (112), Expect = 6e-06
Identities = 28/82 (34%), Positives = 41/82 (49%), Gaps = 1/82 (1%)
Query: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPISNYI 561
+V+ +F+ E L+AT + G+DI +LV+ +DLP E SYV GR RA
Sbjct: 281 DVMNEFKRGEYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKA 340
Query: 562 MLADTDKIKSFEEDLKTYKAIE 583
+ T K F D++ Y E
Sbjct: 341 ISFVTAFEKRFLADIEEYIGFE 362
>gi|16078650|ref|NP_389469.1| ATP-dependent DNA helicase [Bacillus
subtilis subsp. subtilis str. 168]
Length = 682
Score = 42.4 bits (98), Expect = 3e-04
Identities = 26/98 (26%), Positives = 53/98 (53%), Gaps = 4/98 (4%)
Query: 445 IIFVERRYT----AVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRK 500
+ FVE+ A ++ LI+E+ K D + A N ++ GK + +
Sbjct: 456 LAFVEKELKQGRQAYIICPLIEESDKLDVQNAIDVYNMLSDIFRGKWNVGLMHGKLHSDE 515
Query: 501 QEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFD 538
+++V+R+F A+ +L++T++VE GV++P ++V +D
Sbjct: 516 KDQVMREFSANHCQILVSTTVVEVGVNVPNATIMVIYD 553
>gi|16077525|ref|NP_388339.1| hypothetical protein BSU04580
[Bacillus subtilis subsp. subtilis str. 168]
Length = 511
Score = 42.0 bits (97), Expect = 3e-04
Identities = 30/94 (31%), Positives = 44/94 (45%), Gaps = 7/94 (7%)
Query: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPIS 558
K+ LRKF+ +L+AT + G+DI V FD+P + SYV GR RA +
Sbjct: 296 KRMVALRKFKEGAIEVLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAGKT 355
Query: 559 NYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSK 592
M T + KS +AIE+ + K +
Sbjct: 356 GMAMTFITPREKSM------LRAIEQTTKRKMDR 383
>gi|16079569|ref|NP_390393.1| hypothetical protein BSU25140
[Bacillus subtilis subsp. subtilis str. 168]
Length = 438
Score = 39.3 bits (90), Expect = 0.002
Identities = 25/81 (30%), Positives = 42/81 (50%), Gaps = 5/81 (6%)
Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR-ARAPI 557
R++++V+++ E +IAT + G+DI + V+ ++LP + YV GR ARA
Sbjct: 282 RERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINYELPDDLDFYVHRVGRTARAGS 341
Query: 558 SNYIM----LADTDKIKSFEE 574
S M L D D + E+
Sbjct: 342 SGQAMTIYELTDEDALVRLEK 362
>gi|16077123|ref|NP_387936.1| transcription-repair coupling factor
[Bacillus subtilis subsp. subtilis str. 168]
Length = 1177
Score = 37.7 bits (86), Expect = 0.007
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 502 EEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFD 538
E V+ F E+++L++T+I+E GVDIP N ++ FD
Sbjct: 874 ETVMLSFLEGESDVLVSTTIIETGVDIPNVNTLIVFD 910
>gi|16080570|ref|NP_391397.1| excinuclease ABC subunit B [Bacillus
subtilis subsp. subtilis str. 168]
Length = 661
Score = 37.4 bits (85), Expect = 0.009
Identities = 24/69 (34%), Positives = 38/69 (54%), Gaps = 6/69 (8%)
Query: 503 EVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTE-----YRSYVQSKGR-ARAP 556
E++R R + ++L+ +++ EG+DIP+ +LV D E RS +Q+ GR AR
Sbjct: 486 EIIRDLRLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 545
Query: 557 ISNYIMLAD 565
IM AD
Sbjct: 546 EGRVIMYAD 554
>gi|16080600|ref|NP_391427.1| late competence protein [Bacillus
subtilis subsp. subtilis str. 168]
Length = 463
Score = 35.8 bits (81), Expect = 0.025
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 490 RNKQMEAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPK 530
R + AE + ++E +++FR + +LLI T+I+E GV +PK
Sbjct: 355 RTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPK 395
>gi|16077810|ref|NP_388624.1| hypothetical protein BSU07430
[Bacillus subtilis subsp. subtilis str. 168]
Length = 376
Score = 35.0 bits (79), Expect = 0.042
Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 495 EAEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
EA+ ++ +++ F E LL+AT I G+DI V+ D+P E YV GR
Sbjct: 274 EAKKMERAKIIATFEDGEFPLLLATDIAARGLDIENLPYVIHADIPDE-DGYVHRSGR 330
>gi|16078982|ref|NP_389803.1| hypothetical protein BSU19220
[Bacillus subtilis subsp. subtilis str. 168]
Length = 591
Score = 33.5 bits (75), Expect = 0.12
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 497 EFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
+ RK+++ +F E +++ATS G+D V+ +P + SY Q GRA
Sbjct: 267 DVRKEQQ--ERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGRA 321
>gi|16079514|ref|NP_390338.1| hypothetical protein BSU24580
[Bacillus subtilis subsp. subtilis str. 168]
Length = 557
Score = 30.8 bits (68), Expect = 0.80
Identities = 31/108 (28%), Positives = 46/108 (41%), Gaps = 22/108 (20%)
Query: 445 IIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFRKQEEV 504
IIF E R T + L +++ G ISS G G + + M+ FR + +V
Sbjct: 376 IIFTEYRATQIYLQWFLQQNG--------ISSVPFRG---GFKRGKKDWMKDLFRGKIQV 424
Query: 505 LRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGR 552
L IAT EG+++ CN ++ +DLP Q GR
Sbjct: 425 L-----------IATEAGGEGINLQFCNHMINYDLPWNPMRLEQRIGR 461
>gi|16079359|ref|NP_390183.1| ATP-dependent DNA helicase [Bacillus
subtilis subsp. subtilis str. 168]
Length = 496
Score = 30.4 bits (67), Expect = 1.0
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 504 VLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA 553
+ ++F ++ +++ T+ GVD P V+ F LP +++Q GRA
Sbjct: 271 IQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA 320
>gi|16079280|ref|NP_390104.1| hypothetical protein BSU22220
[Bacillus subtilis subsp. subtilis str. 168]
Length = 749
Score = 29.3 bits (64), Expect = 2.3
Identities = 22/76 (28%), Positives = 38/76 (49%), Gaps = 2/76 (2%)
Query: 499 RKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRA--RAP 556
+++ E+ R R + +++T+ +E GVDI + + V P S Q GRA R
Sbjct: 331 KERREIERGLREGDILGVVSTNALELGVDIGQLQVCVMTGYPGSVASAWQQAGRAGRRHG 390
Query: 557 ISNYIMLADTDKIKSF 572
S IM+A++ I +
Sbjct: 391 ESLIIMVANSTPIDQY 406
>gi|16081087|ref|NP_391915.1| transcriptional regulator (NtrC/NifA
family) [Bacillus subtilis subsp. subtilis str. 168]
Length = 461
Score = 28.1 bits (61), Expect = 5.2
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 20/116 (17%)
Query: 491 NKQMEAEFRKQEEVLRK-------FRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEY 543
NK M+ E ++ +VL K F + + L+ ++EG I
Sbjct: 37 NKMMQIEDMEKHDVLNKNLMDVFMFSKQQDSTLVQA--LQEGKTIKNVK----------- 83
Query: 544 RSYVQSKGRARAPISNYIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGET 599
+SY +KG+ I++ + KI+ E K +E+++R +K T T
Sbjct: 84 QSYFNNKGQEITTINHTYPIVQDGKIRGAVEIAKDVTKLERLIRENMNKKGSTTYT 139
>gi|16080045|ref|NP_390871.1| pullulanase [Bacillus subtilis subsp.
subtilis str. 168]
Length = 718
Score = 27.3 bits (59), Expect = 8.8
Identities = 11/31 (35%), Positives = 19/31 (60%)
Query: 1533 ENCGVDTGKQSISYDLHTEQCIADKSIADCV 1563
+ CG+ + + D+ +E+ +A K IADCV
Sbjct: 361 DECGMPSNGTGVGNDIASERRMARKFIADCV 391
Database: NC_000964
Posted date: Jun 21, 2009 11:38 AM
Number of letters in database: 1,221,421
Number of sequences in database: 4105
Lambda K H
0.319 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,155,855
Number of Sequences: 4105
Number of extensions: 166484
Number of successful extensions: 406
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 383
Number of HSP's gapped (non-prelim): 23
length of query: 1922
length of database: 1,221,421
effective HSP length: 98
effective length of query: 1824
effective length of database: 819,131
effective search space: 1494094944
effective search space used: 1494094944
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
BLASTP 2.2.2 [Jan-08-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|155030234|ref|NP_037367.3| ribonuclease III, nuclear isoform
1 [Homo sapiens]
(1374 letters)
Database: NC_000964
4105 sequences; 1,221,421 total letters
Searching.........done
Score E
Sequences producing significant alignments: (bits) Value
gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis... 119 9e-28
gi|50812236|ref|NP_389601.2| polyketide synthase [Bacillus subti... 29 1.7
gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus subt... 28 2.8
gi|16080582|ref|NP_391409.1| peptide chain release factor 2 [Bac... 28 3.7
gi|16079863|ref|NP_390689.1| required for assembly of the spore ... 27 6.3
gi|16077459|ref|NP_388273.1| succinate-semialdehyde dehydrogenas... 27 6.3
gi|16080133|ref|NP_390959.1| hypothetical protein BSU30810 [Baci... 27 8.2
gi|16078464|ref|NP_389283.1| hypothetical protein BSU14000 [Baci... 27 8.2
>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis
subsp. subtilis str. 168]
Length = 249
Score = 119 bits (299), Expect = 9e-28
Identities = 80/231 (34%), Positives = 126/231 (53%), Gaps = 9/231 (3%)
Query: 1104 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGH--NQRMEFLGDSIMQLVATEY 1161
+++ EF+E I V F + +LL +AFT + H + N+R+EFLGD++++L + +
Sbjct: 17 VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76
Query: 1162 LFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAITNDKTKRPVA-LRTKTLADL 1220
LF +P EG LT LR+++V + +A EL + + + R LAD+
Sbjct: 77 LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLGKGEEMTGGRKRPALLADV 136
Query: 1221 LESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPD 1280
E+FI ALY+D+ LE V +F+ V FP++ + + D KSQLQ+ ++ +GK
Sbjct: 137 FEAFIGALYLDQGLEPVESFLKVYVFPKINDGAFSHVM-DFKSQLQE---YVQRDGK--G 190
Query: 1281 IPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEK 1331
YK GP+H R + V KGE +G G G S ++AE AA +AL K
Sbjct: 191 SLEYKISNEKGPAHNREFEAIVSLKGEPLGVGNGRSKKEAEQHAAQEALAK 241
Score = 68.6 bits (166), Expect = 2e-12
Identities = 40/105 (38%), Positives = 55/105 (52%)
Query: 965 NERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLY 1024
NERLEFLGDAV+E S L+ +P++ EG L R AIV L LA +L +L
Sbjct: 58 NERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLL 117
Query: 1025 AHGPDLCRESDLRHAMANCFEALIGAVYLEGSLEEAKQLFGRLLF 1069
G ++ +A+ FEA IGA+YL+ LE + +F
Sbjct: 118 GKGEEMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVF 162
>gi|50812236|ref|NP_389601.2| polyketide synthase [Bacillus subtilis
subsp. subtilis str. 168]
Length = 4262
Score = 29.3 bits (64), Expect = 1.7
Identities = 21/74 (28%), Positives = 37/74 (49%), Gaps = 8/74 (10%)
Query: 1188 AKVAEELGMQEYAITNDKTKRPVALRTKTLADLLESFIAALYIDKDL-EYVHTFMNVCFF 1246
++V+ LGM E AI T+ P+A K D +++ ++ DL E++HT + +
Sbjct: 3375 SRVSRFLGMTEPAIPEPATQAPLAQENK---DEVKTLSIEKRLEHDLKEHIHTLLKI--- 3428
Query: 1247 PRLKEFILNQDWND 1260
LN++W D
Sbjct: 3429 -SKDRLNLNKNWAD 3441
>gi|16077075|ref|NP_387888.1| DNA gyrase subunit A [Bacillus
subtilis subsp. subtilis str. 168]
Length = 821
Score = 28.5 bits (62), Expect = 2.8
Identities = 20/77 (25%), Positives = 38/77 (48%), Gaps = 14/77 (18%)
Query: 787 DPQYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREE-------------ALQKIRQKNT 833
+ +YQ L K +L+ +LAN KV + +++L + +E L+ I ++
Sbjct: 441 EEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKERFNDERRTEIVTSGLETIEDEDL 500
Query: 834 MRRE-VTVELSSQGFWK 849
+ RE + V L+ G+ K
Sbjct: 501 IERENIVVTLTHNGYVK 517
>gi|16080582|ref|NP_391409.1| peptide chain release factor 2
[Bacillus subtilis subsp. subtilis str. 168]
Length = 366
Score = 28.1 bits (61), Expect = 3.7
Identities = 14/48 (29%), Positives = 25/48 (51%)
Query: 789 QYQKLWKSYVKLRHLLANSPKVKQTDKQKLAQREEALQKIRQKNTMRR 836
Q+ S V++ HL N QT++ ++ RE A++ ++ K RR
Sbjct: 251 QHVNTTDSAVRITHLPTNVVVTCQTERSQIKNRERAMKMLKAKLYQRR 298
>gi|16079863|ref|NP_390689.1| required for assembly of the spore coat
(stage VI sporulation) [Bacillus subtilis subsp. subtilis
str. 168]
Length = 575
Score = 27.3 bits (59), Expect = 6.3
Identities = 25/105 (23%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 1274 TEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPS-IQQAEMGAAMDALEKY 1332
T+ KEP+IPLY+ F+ E + S +++ +A +A+ ++
Sbjct: 140 TQDKEPEIPLYE--------------APAAFREEELSEPPAHSVVEEPGASSAEEAVLQH 185
Query: 1333 NFPQMAHQKRFIERKYRQELKEMRWEREHQE---REPDETEDIKK 1374
P + + R+EL+ + E E E EP+ ED+K+
Sbjct: 186 EPPAEPPELFISKAGLREELETEKAESEPPESVASEPEAREDVKE 230
>gi|16077459|ref|NP_388273.1| succinate-semialdehyde dehydrogenase
[Bacillus subtilis subsp. subtilis str. 168]
Length = 462
Score = 27.3 bits (59), Expect = 6.3
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 1045 EALIGAVYLEGSLEEAKQLFGR 1066
E L GA Y+E EEAK+++GR
Sbjct: 85 EVLYGAGYIEWFAEEAKRVYGR 106
>gi|16080133|ref|NP_390959.1| hypothetical protein BSU30810
[Bacillus subtilis subsp. subtilis str. 168]
Length = 274
Score = 26.9 bits (58), Expect = 8.2
Identities = 12/29 (41%), Positives = 16/29 (54%)
Query: 872 YHQCLMHLDKLIGYTFQDRCLLQLAMTHP 900
+ Q +H KLIGY+ R AMT+P
Sbjct: 85 FDQLKLHKVKLIGYSMGGRLAYSFAMTYP 113
>gi|16078464|ref|NP_389283.1| hypothetical protein BSU14000
[Bacillus subtilis subsp. subtilis str. 168]
Length = 392
Score = 26.9 bits (58), Expect = 8.2
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 953 GQDDPTPSRINHNERLEFLGDAVVEFLTSV----HLYYLFPSLEEGGLATY 999
G DD R + +RL+++ D +V V +Y+FPS++ G+ ++
Sbjct: 278 GFDDALIMREQYKKRLDYVYDRLVSMGLDVVKPSGAFYIFPSIKSFGMTSF 328
Database: NC_000964
Posted date: Jun 21, 2009 11:38 AM
Number of letters in database: 1,221,421
Number of sequences in database: 4105
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,679,991
Number of Sequences: 4105
Number of extensions: 104631
Number of successful extensions: 218
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 208
Number of HSP's gapped (non-prelim): 11
length of query: 1374
length of database: 1,221,421
effective HSP length: 95
effective length of query: 1279
effective length of database: 831,446
effective search space: 1063419434
effective search space used: 1063419434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
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