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# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
import unittest
try:
import numpy
except ImportError:
from Bio import MissingExternalDependencyError
raise MissingExternalDependencyError(
"Install NumPy if you want to use Bio.KDTree.")
try:
from Bio.KDTree import _CKDTree
except ImportError:
from Bio import MissingExternalDependencyError
raise MissingExternalDependencyError(
"C module in Bio.KDTree not compiled")
from Bio.KDTree.KDTree import _neighbor_test, _test
nr_points = 5000
dim = 3
bucket_size = 5
radius = 0.01
class KDTreeTest(unittest.TestCase):
def test_KDTree_neighbour(self):
for i in range(0, 10):
self.assertTrue(_neighbor_test(nr_points, dim, bucket_size, radius))
def test_KDTree(self):
for i in range(0, 10):
self.assertTrue(_test(nr_points, dim, bucket_size, radius))
if __name__ == "__main__":
runner = unittest.TextTestRunner(verbosity=2)
unittest.main(testRunner=runner)
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