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# Copyright 2012 by Wibowo Arindrarto. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Tests for SearchIO fasta-m10 indexing."""
import os
import unittest
from search_tests_common import CheckIndex
class FastaM10IndexCases(CheckIndex):
fmt = 'fasta-m10'
def test_output_002(self):
"""Test fasta-m10 indexing, fasta34, multiple queries"""
filename = os.path.join('Fasta', 'output002.m10')
self.check_index(filename, self.fmt)
def test_output_001(self):
"""Test fasta-m10 indexing, fasta35, multiple queries"""
filename = os.path.join('Fasta', 'output001.m10')
self.check_index(filename, self.fmt)
def test_output_005(self):
"""Test fasta-m10 indexing, ssearch35, multiple queries"""
filename = os.path.join('Fasta', 'output005.m10')
self.check_index(filename, self.fmt)
def test_output_008(self):
"""Test fasta-m10 indexing, tfastx36, multiple queries"""
filename = os.path.join('Fasta', 'output008.m10')
self.check_index(filename, self.fmt)
def test_output_009(self):
"""Test fasta-m10 indexing, fasta36, multiple queries"""
filename = os.path.join('Fasta', 'output009.m10')
self.check_index(filename, self.fmt)
def test_output_010(self):
"""Test fasta-m10 indexing, fasta36, single query, no hits"""
filename = os.path.join('Fasta', 'output010.m10')
self.check_index(filename, self.fmt)
def test_output_011(self):
"""Test fasta-m10 indexing, fasta36, single query, hits with single hsp"""
filename = os.path.join('Fasta', 'output011.m10')
self.check_index(filename, self.fmt)
def test_output_012(self):
"""Test fasta-m10 indexing, fasta36, single query with multiple hsps"""
filename = os.path.join('Fasta', 'output012.m10')
self.check_index(filename, self.fmt)
if __name__ == "__main__":
runner = unittest.TextTestRunner(verbosity=2)
unittest.main(testRunner=runner)
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