python-biopython (1.68+dfsg-3) unstable; urgency=medium

  * (Build-)Depend: phyml only on those architectures where it is available
  * Relax test conditions in test_phenotype_fit to work around some rounding
    differences on arm64
    (see https://github.com/biopython/biopython/issues/1038 )

 -- Andreas Tille <tille@debian.org>  Fri, 20 Jan 2017 16:52:04 +0100

python-biopython (1.68+dfsg-2) unstable; urgency=medium

  * Add Tutorial.tex to *-doc package since its used in autopkgtest and
    its just an ignorable payload for this package
  * debhelper 10
  * d/watch: version=4
  * Add python-scipy since it is used in test suite

 -- Andreas Tille <tille@debian.org>  Sun, 15 Jan 2017 14:56:26 +0100

python-biopython (1.68+dfsg-1) unstable; urgency=medium

  * New upstream version

 -- Andreas Tille <tille@debian.org>  Mon, 29 Aug 2016 13:23:35 +0200

python-biopython (1.67+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Point d/watch to github
  * xz compression in d/watch
  * Take over patch from upstream to fix detection of rpsblast
  * Skip test needing a network connection
  * Add +bindnow hardening option
  * Delete useless .cvsignore files from package
  * New Build-Depends for documentation: hevea, texlive-latex-base,
    texlive-latex-extra, texlive-fonts-recommended
  * Makefile for Doc needs to be separately called (clean and build)
  * Remove doc sources from binary doc package

 -- Andreas Tille <tille@debian.org>  Thu, 09 Jun 2016 13:05:14 +0200

python-biopython (1.66+dfsg-3) unstable; urgency=medium

  * Apply fix from upstream for test case dealing with new blastp output format
    Closes: #824048
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Thu, 19 May 2016 16:48:15 +0200

python-biopython (1.66+dfsg-2) unstable; urgency=medium

  * Packaging moved from SVN to Git
  * Bumped Standards-Version
  * Exclude phyml test for the moment
    Closes: #813262

 -- Andreas Tille <tille@debian.org>  Wed, 09 Mar 2016 15:25:38 +0100

python-biopython (1.66+dfsg-1) unstable; urgency=medium

  * New upstream version (some patches applied upstream)

 -- Andreas Tille <tille@debian.org>  Sun, 08 Nov 2015 19:28:26 +0100

python-biopython (1.65+dfsg-3) unstable; urgency=medium

  * Also run Tutorial test
  * Prefer Github as contact point
  * Build-Depends: python3-mysqldb
    Closes: #801112

 -- Andreas Tille <tille@debian.org>  Tue, 06 Oct 2015 16:53:06 +0200

python-biopython (1.65+dfsg-2) unstable; urgency=medium

  * Build-Depends & Suggests: phylip + fixed test_phyml_tool
    Closes: #799820
  * debian/clean: Remove test results occuring now since phylip can be used
  * Activate more tests formerly deactivated

 -- Andreas Tille <tille@debian.org>  Wed, 23 Sep 2015 15:18:58 +0200

python-biopython (1.65+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Apply fix for broken test from Upstream Git
  * Versioned (Build-)Depends: python-rdflib (>= 4)
  * Prevent privacy-breach-logo

 -- Andreas Tille <tille@debian.org>  Tue, 12 May 2015 11:08:43 +0200

python-biopython (1.64+dfsg-5) unstable; urgency=medium

  * Exclude samtools test from unit testing for the moment since this
    package is in flux and it is not clear what architectures will be
    supported finally
  * Do not suggest python3 packages in python-biopython and no
    python package sin python3-biopython
  * cme fix dpkg-control

 -- Andreas Tille <tille@debian.org>  Wed, 24 Sep 2014 10:08:12 +0200

python-biopython (1.64+dfsg-4) unstable; urgency=medium

  * debian/patches/fix_test_problem_on_powerpc.patch: Patch provided by
    upstream to run test suite on PowerPC (thanks to Michiel de Hoon
    <mjldehoon@yahoo.com>)
    Closes: #751277
  * Install egg metadata
    Closes: #743927
  * Add samtools to Build-Depends + Recommends since it is checked in test
    suite

 -- Andreas Tille <tille@debian.org>  Mon, 01 Sep 2014 15:59:30 +0200

python-biopython (1.64+dfsg-3) unstable; urgency=medium

  * Skip test on mips architecture which is known to fail
  * Versioned (Build-)Depends wise (>= 2.4.1-16) to make sure tests
    will pass on each architecture (problems with previous wise on
    powerpc, s390x)

 -- Andreas Tille <tille@debian.org>  Fri, 15 Aug 2014 11:41:23 +0200

python-biopython (1.64+dfsg-2) unstable; urgency=medium

  * Use HOME in build_dir for testing (thanks to Jakub Wilk <jwilk@debian.org>
    for the patch)
    Closes: #751586

 -- Andreas Tille <tille@debian.org>  Sat, 14 Jun 2014 20:12:02 +0200

python-biopython (1.64+dfsg-1) unstable; urgency=medium

  * New upstream version
  * Build-Depends raxml only on those architectures where it is available
    Closes: #750845

 -- Andreas Tille <tille@debian.org>  Sun, 08 Jun 2014 10:25:35 +0200

python-biopython (1.63+dfsg-5) unstable; urgency=medium

  * Apply upstream fix to fix cpairwise2 import issue under python3 
    Closes: #747494

 -- Andreas Tille <tille@debian.org>  Sat, 10 May 2014 07:52:48 +0200

python-biopython (1.63+dfsg-4) unstable; urgency=medium

  [ Martin Pitt ]
  * Depend on our own packages in the autopkgtest and add missing
    "allow-stderr" restriction.
    Closes: #747391

  [ Andreas Tille ]
  * Move ncbi-blast+ from Suggests to Recommends due to a hint from
    upstream

 -- Andreas Tille <tille@debian.org>  Thu, 08 May 2014 11:33:47 +0200

python-biopython (1.63+dfsg-3) unstable; urgency=medium

  * Set HOME=/tmp also in autopkgtest
  * Do not try to create doc in arch-only builds

 -- Andreas Tille <tille@debian.org>  Sun, 04 May 2014 00:18:47 +0200

python-biopython (1.63+dfsg-2) unstable; urgency=medium

  * Force writable HOME to make sure t-coffee test will pass
    Closes: #746624

 -- Andreas Tille <tille@debian.org>  Fri, 02 May 2014 23:14:50 +0200

python-biopython (1.63+dfsg-1) unstable; urgency=medium

  * Remove Bio\Entrez\DTDs\mathml2-qname-1.mod
    Closes: #746484

 -- Andreas Tille <tille@debian.org>  Wed, 30 Apr 2014 14:47:53 +0200

python-biopython (1.63-2) unstable; urgency=medium

  * Enable Python3
  * debian/copyright:
     - Add Upstream-Contact
     - DEP5
  * Run (nearly) full test suite
  * Add autopkgtest
  * Add packages from Build-Depends needed for tests to Depends

 -- Andreas Tille <tille@debian.org>  Thu, 06 Mar 2014 11:51:27 +0100

python-biopython (1.63-1) unstable; urgency=low

  * New upstream release

 -- Philipp Benner <philipp@debian.org>  Thu, 09 Jan 2014 15:38:19 +0100

python-biopython (1.62-1) unstable; urgency=low

  * New upstream release
  * Using CDBS to build the package

 -- Philipp Benner <philipp@debian.org>  Sun, 15 Sep 2013 16:36:26 +0200

python-biopython (1.61-1) unstable; urgency=low

  [ Andreas Tille ]
  * debian/upstream:
     - Took over citation information from tasks file
     - Valid BibTeX authors field
     - Firstnames of authors
  * debian/control: Fixed Vcs fields

  [ Philipp Benner ]
  * New upstream release
  * Standards version 3.9.4

 -- Philipp Benner <philipp@debian.org>  Thu, 14 Feb 2013 22:08:04 +0100

python-biopython (1.60-1) unstable; urgency=low

  * New upstream release.
  * Removed quilt dependency.
  * Migrated to dh_python2.
  * patches/01-enable-mmCIF.patch: not required anymore.
  * debian/source/format: 3.0 (quilt) added.
  * debian/rules: added hardening flags.

 -- Philipp Benner <philipp@debian.org>  Sat, 29 Sep 2012 16:43:59 +0200

python-biopython (1.59-1) unstable; urgency=low

  * New upstream release.
  * debian/control: Standards version 3.9.3.
  * debian/rules: added dh_numpy.

 -- Philipp Benner <philipp@debian.org>  Fri, 09 Mar 2012 13:38:09 +0000

python-biopython (1.58-1) unstable; urgency=low

  * New upstream release.
  * debian/rules: added targets build-arch and build-indep.
  * debian/control: Standards version 3.9.2.

 -- Philipp Benner <philipp@debian.org>  Wed, 02 Nov 2011 19:51:49 +0000

python-biopython (1.57-1) unstable; urgency=low

  * New upstream release (Closes: #585282).

 -- Philipp Benner <philipp@debian.org>  Sun, 10 Apr 2011 17:58:01 +0000

python-biopython (1.56-1) unstable; urgency=low

  * New upstream release.

 -- Philipp Benner <philipp@debian.org>  Thu, 02 Dec 2010 17:30:09 +0000

python-biopython (1.54-1) unstable; urgency=low

  * New upstream release.

 -- Philipp Benner <philipp@debian.org>  Fri, 28 May 2010 00:06:43 +0200

python-biopython (1.53-1) unstable; urgency=low

  * New upstream release.

 -- Philipp Benner <philipp@debian.org>  Mon, 21 Dec 2009 15:30:37 +0000

python-biopython (1.52-1) unstable; urgency=low

  * New upstream release.

 -- Philipp Benner <philipp@debian.org>  Wed, 30 Sep 2009 10:16:03 +0000

python-biopython (1.51final-2) unstable; urgency=low

  * Merged patch from ubuntu to make the package ready for
    python2.6 (Closes: #543236).

 -- Philipp Benner <philipp@debian.org>  Mon, 24 Aug 2009 09:29:27 +0000

python-biopython (1.51final-1) unstable; urgency=low

  * New upstream release
  * debian/control: suggesting muscle, clustalw, mafft, emboss, and
    blast2 for installation

 -- Philipp Benner <philipp@debian.org>  Wed, 19 Aug 2009 10:41:19 +0000

python-biopython (1.51b-2) unstable; urgency=low

  * Dropped python-biopython-martel.
  * Dropped dependency on python-egenix-mxtexttools.
  * Removed DM-Upload-Allowed: yes.

 -- Philipp Benner <philipp@debian.org>  Tue, 11 Aug 2009 19:47:52 +0000

python-biopython (1.51b-1) unstable; urgency=low

  * New upstream release
  * debian/control:
    - moved python-martel back to section python (python packages do not
    use section oldlibs)
  * debian/patches/02-fix-wise-test.patch
    - removed (merged with upstream)
  * debian/control:
    - Changed the description of python-biopython-sql according to Peter Cock's
      suggestions.
    [Charles Plessy]

 -- Philipp Benner <pbenner@uni-osnabrueck.de>  Sat, 27 Jun 2009 15:14:52 +0000

python-biopython (1.49-1) unstable; urgency=low

  * New upstream release.
    - uses NumPy rather than its precursor Numeric (Closes: #478457)
    - Martel, Bio.Mindy, Bio.MetaTool, Bio.EUtils, Bio.Saf, Bio.NBRF, and
      Bio.IntelliGenetics are deprecated.
    - Bio.PubMed and the online code in Bio.GenBank are now considered obsolete
      and will be deprecated in a future release.
    - Bio.Fasta is also considered to be obsolete and will eventually be
      deprecated.
  * debian/control:
    - added myself as Uploader.
    - depends on python-numpy instead of python-numeric-ext.
    - moved python-martel to oldlibs section, priority extra as it is
      deprecated, and indicate this in the description.
    - build-depend on python-mysqldb and wise for the tests after building.
  * Use Debhelper 7 (debian/co{ntrol,mpat}).
  * debian/copyright: added myself to the Hall of Fame and updated to latest
    draft of the machine-readable format.
  * debian/watch: makes beta versions lower by prepending a tilde between
    numbers and letters (1.49b -> 1.49~b).
  * mmCIF support enabled:
    - debian/patches/01-enable-mmCIF.patch: as the name indicates ;)
    - debian/rules: patch and unpatch through /usr/share/quilt/quilt.make.
    - debian/control: build-depends on quilt.
  * debian/python-biopython-doc.doc-base: corrected index name that was changed
    upstream.
  * debian/patches/02-fix-wise-test.patch: prevents tests failing with Debian's
    version of Wise.
  * debian/rules: perform tests after build.

 -- Charles Plessy <plessy@debian.org>  Fri, 23 Jan 2009 22:19:50 +0900

python-biopython (1.47-1) unstable; urgency=low

  * New upstream release
  * Standards version 3.8.0

 -- Philipp Benner <pbenner@uni-osnabrueck.de>  Sun, 03 Aug 2008 14:29:33 +0200

python-biopython (1.45-3) unstable; urgency=low

  * Removed dependency on python-numeric-ext since it is already in
    the recommends field

 -- Philipp Benner <pbenner@uni-osnabrueck.de>  Sun, 01 Jun 2008 10:34:48 +0200

python-biopython (1.45-2) unstable; urgency=low

  * Add dependency on python-numeric-ext (Bio.PDB uses MLab from this package)

 -- Morten Kjeldgaard <mok@bioxray.au.dk>  Wed, 23 Apr 2008 00:01:16 +0200

python-biopython (1.45-1) unstable; urgency=low

  * New upstream release.
  * Added doc-base.

 -- Philipp Benner <pbenner@uni-osnabrueck.de>  Sat, 29 Mar 2008 12:20:41 +0100

python-biopython (1.44-3) unstable; urgency=low

  * New maintainer e-mail address.
  * debian/control: Added DM-Upload-Allowed: yes.

 -- Philipp Benner <pbenner@uni-osnabrueck.de>  Mon, 14 Jan 2008 18:35:18 +0100

python-biopython (1.44-2) unstable; urgency=low

  * Moved suggested package python-numeric-ext to recommends field
    (Closes: #452379).
  * Moved wise from recommends to suggests field.
  * Removed package tags from debian/control.
  * Added homepage field to debian/control.
  * Changed maintainer to Debian-Med Packaging Team.
  * Removed .DS_Store.gz file from doc package.

 -- Philipp Benner <mail@philipp-benner.de>  Thu, 22 Nov 2007 13:35:00 +0100

python-biopython (1.44-1) unstable; urgency=low

  * New upstream release.
  * Machine interpretable copyright file.

 -- Philipp Benner <mail@philipp-benner.de>  Fri, 16 Nov 2007 16:49:11 +0100

python-biopython (1.43-2) unstable; urgency=low

  * Rebuild for python-2.5 support (Closes: #424025).

 -- Philipp Benner <mail@philipp-benner.de>  Thu, 14 Jun 2007 21:40:18 +0200

python-biopython (1.43-1) unstable; urgency=low

  * New upstream release
  * Adapted debian-med tags

 -- Philipp Benner <mail@philipp-benner.de>  Tue, 27 Mar 2007 17:45:58 +0200

python-biopython (1.42-2) unstable; urgency=low

  * uscan support
  * package tags

 -- Philipp Benner <mail@philipp-benner.de>  Sat,  9 Sep 2006 14:39:18 +0200

python-biopython (1.42-1) unstable; urgency=low

  * New upstream release

 -- Philipp Benner <mail@philipp-benner.de>  Sat, 22 Jul 2006 01:30:51 +0200

python-biopython (1.41-2.1) unstable; urgency=low

  * Non-maintainer upload.
  * Update package to the last python policy (Closes: #373515).

 -- Pierre Habouzit <madcoder@debian.org>  Fri, 30 Jun 2006 13:45:39 +0200

python-biopython (1.41-2) unstable; urgency=low

  * suggests python-numeric-ext
  * now with KDTree

 -- Philipp Benner <mail@philipp-benner.de>  Mon, 20 Feb 2006 21:02:18 +0100

python-biopython (1.41-1) unstable; urgency=low

  * New upstream release

 -- Philipp Benner <mail@philipp-benner.de>  Sat,  5 Nov 2005 20:15:03 +0100

python-biopython (1.40b-3) unstable; urgency=low

  * now using compatibility level 4
  * removed obsolete dependencies (closes: #328142)

 -- Philipp Benner <mail@philipp-benner.de>  Wed, 14 Sep 2005 12:06:06 +0200

python-biopython (1.40b-2) unstable; urgency=low

  * Function `mmcif_get_string' implicitly converted to pointer
    (closes: #326403)
  * now standards version 3.6.2

 -- Philipp Benner <mail@philipp-benner.de>  Wed,  7 Sep 2005 09:53:30 +0200

python-biopython (1.40b-1) unstable; urgency=low

  * new release
  * dropped support for python2.2

 -- Philipp Benner <mail@philipp-benner.de>  Tue, 05 Apr 2005 20:55:59 +0200

python-biopython (1.30-2) unstable; urgency=low

  * Fixed bugs in debian/rules and debian/control which prevented
    porting the package.
  * Using -fPIC to build shared lib KDTree. (closes: #278959)

 -- Philipp Benner <mail@philipp-benner.de>  Sun, 10 Oct 2004 19:48:04 +0200

python-biopython (1.30-1) unstable; urgency=low

  * Initial Release. (closes: #157402)

 -- Philipp Benner <mail@philipp-benner.de>  Tue, 21 Sep 2004 20:02:00 +0200