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TBLASTN 2.2.26+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: NCBI Transcript Reference Sequences
2,903,055 sequences; 4,626,651,242 total letters
Query= gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus
subtilis subsp. subtilis str. 168]
Length=102
Score E
Sequences producing significant alignments: (Bits) Value
ref|XM_001425911.1| Paramecium tetraurelia hypothetical protein ... 34.7 0.74
ref|XM_003382561.1| PREDICTED: Amphimedon queenslandica CWF19-li... 32.0 6.4
ref|XM_001180111.1| PREDICTED: Strongylocentrotus purpuratus hyp... 31.6 7.0
ref|XM_777959.1| PREDICTED: Strongylocentrotus purpuratus hypoth... 31.6 7.0
>ref|XM_001425911.1| Paramecium tetraurelia hypothetical protein (GSPATT00004923001)
partial mRNA
Length=4632
Score = 34.7 bits (78), Expect = 0.74, Method: Composition-based stats.
Identities = 15/43 (35%), Positives = 26/43 (60%), Gaps = 0/43 (0%)
Frame = +1
Query 31 PDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLD 73
P + TK+GT +GL HTI + + +SL++ E++ D+D
Sbjct 1744 PKTATGTKKGTIIGLLSIHTILFILTSHALSLEVKEQT*KDID 1872
>ref|XM_003382561.1| PREDICTED: Amphimedon queenslandica CWF19-like protein 1-like
(LOC100635130), mRNA
Length=1811
Score = 32.0 bits (71), Expect = 6.4, Method: Composition-based stats.
Identities = 19/74 (26%), Positives = 36/74 (49%), Gaps = 11/74 (15%)
Frame = +2
Query 29 VSPDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLDK--------FNSGDK 80
+ DS + +G GL D H + + + + P S+D +E ++DK F+S ++
Sbjct 1106 IGNDSYLALSKG---GLVDEHVLILPIGHYPSSIDAPQEVIEEIDKFKVALRKYFSSKNQ 1276
Query 81 VTITYEKNDEGQLL 94
+ +E+N Q L
Sbjct 1277 TCVMFERNFRSQHL 1318
>ref|XM_001180111.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746
(LOC577746), mRNA
Length=1593
Score = 31.6 bits (70), Expect = 7.0, Method: Composition-based stats.
Identities = 20/59 (34%), Positives = 29/59 (49%), Gaps = 8/59 (14%)
Frame = +1
Query 44 GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL 94
GL HT+ + V + LD+TEE ++LD+F S K + YE+N Q L
Sbjct 1057 GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL 1233
>ref|XM_777959.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746
(LOC577746), mRNA
Length=1593
Score = 31.6 bits (70), Expect = 7.0, Method: Composition-based stats.
Identities = 20/59 (34%), Positives = 29/59 (49%), Gaps = 8/59 (14%)
Frame = +1
Query 44 GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL 94
GL HT+ + V + LD+TEE ++LD+F S K + YE+N Q L
Sbjct 1057 GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL 1233
Lambda K H
0.302 0.125 0.332
Gapped
Lambda K H
0.267 0.0410 0.140
Effective search space used: 38578527885
Database: NCBI Transcript Reference Sequences
Posted date: Mar 1, 2012 8:32 PM
Number of letters in database: 4,626,651,242
Number of sequences in database: 2,903,055
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Neighboring words threshold: 13
Window for multiple hits: 40
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