File: xml_2226_tblastn_003.xml

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<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
  <BlastOutput_program>tblastn</BlastOutput_program>
  <BlastOutput_version>TBLASTN 2.2.26+</BlastOutput_version>
  <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
  <BlastOutput_db>db/minirefseq_mrna</BlastOutput_db>
  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
  <BlastOutput_query-def>gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168]</BlastOutput_query-def>
  <BlastOutput_query-len>102</BlastOutput_query-len>
  <BlastOutput_param>
    <Parameters>
      <Parameters_matrix>BLOSUM62</Parameters_matrix>
      <Parameters_expect>10</Parameters_expect>
      <Parameters_gap-open>11</Parameters_gap-open>
      <Parameters_gap-extend>1</Parameters_gap-extend>
      <Parameters_filter>L;</Parameters_filter>
    </Parameters>
  </BlastOutput_param>
  <BlastOutput_iterations>
    <Iteration>
      <Iteration_iter-num>1</Iteration_iter-num>
      <Iteration_query-ID>Query_1</Iteration_query-ID>
      <Iteration_query-def>gi|16080617|ref|NP_391444.1| membrane bound lipoprotein [Bacillus subtilis subsp. subtilis str. 168]</Iteration_query-def>
      <Iteration_query-len>102</Iteration_query-len>
      <Iteration_hits>
        <Hit>
          <Hit_num>1</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|10</Hit_id>
          <Hit_def>gi|145479850|ref|XM_001425911.1| Paramecium tetraurelia hypothetical protein (GSPATT00004923001) partial mRNA</Hit_def>
          <Hit_accession>10</Hit_accession>
          <Hit_len>4632</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>34.6538</Hsp_bit-score>
              <Hsp_score>78</Hsp_score>
              <Hsp_evalue>1.08241e-05</Hsp_evalue>
              <Hsp_query-from>31</Hsp_query-from>
              <Hsp_query-to>73</Hsp_query-to>
              <Hsp_hit-from>1744</Hsp_hit-from>
              <Hsp_hit-to>1872</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>1</Hsp_hit-frame>
              <Hsp_identity>15</Hsp_identity>
              <Hsp_positive>26</Hsp_positive>
              <Hsp_gaps>0</Hsp_gaps>
              <Hsp_align-len>43</Hsp_align-len>
              <Hsp_qseq>PDSNIETKEGTYVGLADTHTIEVTVDNEPVSLDITEESTSDLD</Hsp_qseq>
              <Hsp_hseq>PKTATGTKKGTIIGLLSIHTILFILTSHALSLEVKEQT*KDID</Hsp_hseq>
              <Hsp_midline>P +   TK+GT +GL   HTI   + +  +SL++ E++  D+D</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>2</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|12</Hit_id>
          <Hit_def>gi|72012412|ref|XM_777959.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746 (LOC577746), mRNA</Hit_def>
          <Hit_accession>12</Hit_accession>
          <Hit_len>1593</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>31.5722</Hsp_bit-score>
              <Hsp_score>70</Hsp_score>
              <Hsp_evalue>0.000102856</Hsp_evalue>
              <Hsp_query-from>44</Hsp_query-from>
              <Hsp_query-to>94</Hsp_query-to>
              <Hsp_hit-from>1057</Hsp_hit-from>
              <Hsp_hit-to>1233</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>1</Hsp_hit-frame>
              <Hsp_identity>20</Hsp_identity>
              <Hsp_positive>29</Hsp_positive>
              <Hsp_gaps>8</Hsp_gaps>
              <Hsp_align-len>59</Hsp_align-len>
              <Hsp_qseq>GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL</Hsp_qseq>
              <Hsp_hseq>GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL</Hsp_hseq>
              <Hsp_midline>GL   HT+ + V +    LD+TEE  ++LD+F S          K  + YE+N   Q L</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
        <Hit>
          <Hit_num>3</Hit_num>
          <Hit_id>gnl|BL_ORD_ID|11</Hit_id>
          <Hit_def>gi|115975252|ref|XM_001180111.1| PREDICTED: Strongylocentrotus purpuratus hypothetical LOC577746 (LOC577746), mRNA</Hit_def>
          <Hit_accession>11</Hit_accession>
          <Hit_len>1593</Hit_len>
          <Hit_hsps>
            <Hsp>
              <Hsp_num>1</Hsp_num>
              <Hsp_bit-score>31.5722</Hsp_bit-score>
              <Hsp_score>70</Hsp_score>
              <Hsp_evalue>0.000102856</Hsp_evalue>
              <Hsp_query-from>44</Hsp_query-from>
              <Hsp_query-to>94</Hsp_query-to>
              <Hsp_hit-from>1057</Hsp_hit-from>
              <Hsp_hit-to>1233</Hsp_hit-to>
              <Hsp_query-frame>0</Hsp_query-frame>
              <Hsp_hit-frame>1</Hsp_hit-frame>
              <Hsp_identity>20</Hsp_identity>
              <Hsp_positive>29</Hsp_positive>
              <Hsp_gaps>8</Hsp_gaps>
              <Hsp_align-len>59</Hsp_align-len>
              <Hsp_qseq>GLADTHTIEVTVDNEPVSLDITEESTSDLDKFNSG--------DKVTITYEKNDEGQLL</Hsp_qseq>
              <Hsp_hseq>GLVPDHTLILPVGHYQSMLDLTEEVQTELDQFKSALRKYYLSKGKTCVIYERNFRTQHL</Hsp_hseq>
              <Hsp_midline>GL   HT+ + V +    LD+TEE  ++LD+F S          K  + YE+N   Q L</Hsp_midline>
            </Hsp>
          </Hit_hsps>
        </Hit>
      </Iteration_hits>
      <Iteration_stat>
        <Statistics>
          <Statistics_db-num>23</Statistics_db-num>
          <Statistics_db-len>67750</Statistics_db-len>
          <Statistics_hsp-len>46</Statistics_hsp-len>
          <Statistics_eff-space>1205400</Statistics_eff-space>
          <Statistics_kappa>0.041</Statistics_kappa>
          <Statistics_lambda>0.267</Statistics_lambda>
          <Statistics_entropy>0.14</Statistics_entropy>
        </Statistics>
      </Iteration_stat>
    </Iteration>
  </BlastOutput_iterations>
</BlastOutput>