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hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: antismash/modules/active_site_finder/data/PKSI-KS_N.hmm2
Sequence file: -
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Query sequence: 0
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
PKSI-KS 211.2 2.7e-64 1
PKSI-FK Fake hit to test other line break 211.2 2.7e-64 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
PKSI-KS 1/1 1 275 [. 1 264 [] 211.2 2.7e-64
PKSI-FK 1/1 1 276 [. 1 265 [] 211.2 2.7e-64
Alignments of top-scoring domains:
PKSI-KS: domain 1 of 1, from 1 to 275: score 211.2, E = 2.7e-64
*->epIAIVGmacRFPGgAdspeaFWelLleGrdaisevPadRwdadafy
+A+VG + PG A++++ +W+ Grd+i+evPa+Rw ++++y
0 1 --VAVVGVGALVPG-ATDAAGYWRVVTGGRDLITEVPASRWRVEDHY 44
dPdgerpGktytrwGgFLddvdlFDAaFFgISPrEAeaMDPQQRLLLEva
dPd+++p+kty+r+G+FL++ +FD+ g++P+ a+D Q L+L+va
0 45 DPDPAAPDKTYARRGAFLPE-VDFDPMAYGVPPANLPATDTSQLLALMVA 93
wEALEdAGippeslrGArhgerlgsrtGVFvGasssDYgdllplrdapdd
+ L dAG + + + rtGV Ga+ + + +
0 94 DQVLRDAGGT-SGIDR--------DRTGVVLGAAALELLPHM-YG----- 128
pedidaya...............................atGtarsilAN
+ + +a+ + ++++ ++ + + ++ + ++ ++++ +G +++A+
0 129 RSQRPAWLaglresgldeakaqavcdriaarfepwrestFPGLLGNVVAG 178
RiSYffdLrGPSltVDTACSSSLVAlHlACqsLrlsGEcdmAlaGGVNLi
Ri+ fdL+G t D+AC+SSL+Al A+ L + +d+ + GGV
0 179 RIANRFDLHGVNHTTDAACASSLAALSTAVGELS-LHRADLVISGGVDTG 227
lsPdmfialsklgmLSPdGrCktFDarADGYvRGEGvGvVvLKRLsDA<-
+ +mf+++sk +LSP G C++F ++ADG+ GE+v++ LKRLsDA
0 228 NDIGMFLCFSKTPALSPSGDCRPFAEAADGTMLGEAVVMYALKRLSDA 275
*
0 - -
PKSI-FK: domain 1 of 1, from 1 to 276: score 211.2, E = 2.7e-64
*->epIAIVGmacRFPGgAdspeaFWelLleGrdaisevPadRwdadafy
+A+VG + PG A++++ +W+ Grd+i+evPa+Rw ++++y
0 1 --VAVVGVGALVPG-ATDAAGYWRVVTGGRDLITEVPASRWRVEDHY 44
dPdgerpGktytrwGgFLddvdlFDAaFFgISPrEAeaMDPQQRLLLEva
dPd+++p+kty+r+G+FL++ +FD+ g++P+ a+D Q L+L+va
0 45 DPDPAAPDKTYARRGAFLPE-VDFDPMAYGVPPANLPATDTSQLLALMVA 93
wEALEdAGippeslrGArhgerlgsrtGVFvGasssDYgdllplrdapdd
+ L dAG + + + rtGV Ga+ + + +
0 94 DQVLRDAGGT-SGIDR--------DRTGVVLGAAALELLPHM-YG----- 128
pedidaya...............................atGtarsilAN
+ + +a+ + ++++ ++ + + ++ + ++ ++++ +G +++A+
0 129 RSQRPAWLaglresgldeakaqavcdriaarfepwrestFPGLLGNVVAG 178
RiSYffdLrGPSltVDTACSSSLVAlHlACqsLrlsGEcdmAlaGGVNLi
Ri+ fdL+G t D+AC+SSL+Al A+ L + +d+ + GGV
0 179 RIANRFDLHGVNHTTDAACASSLAALSTAVGELS-LHRADLVISGGVDTG 227
lsPdmfialsklgmLSPdGrCktFDarADGYvRGEGvGvVvLKRLsDAR<
+ +mf+++sk +LSP G C++F ++ADG+ GE+v++ LKRLsDAR
0 228 NDIGMFLCFSKTPALSPSGDCRPFAEAADGTMLGEAVVMYALKRLSDAR 276
-*
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//
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