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# Copyright 2017 by Peter Cock. All rights reserved.
# This code is part of the Biopython distribution and governed by its
# license. Please see the LICENSE file that should have been included
# as part of this package.
"""Testing Bio.ExPASy online code."""
import unittest
import requires_internet
requires_internet.check()
# We want to test these:
from Bio import ExPASy
# In order to check any records returned
from Bio.ExPASy import Prodoc
from Bio.ExPASy import Prosite
# TODO - Use with statement when drop Python 2
class ExPASyOnlineTests(unittest.TestCase):
"""Test ExPASy online resources."""
def test_prosite_raw(self):
handle = ExPASy.get_prosite_raw('PS00001')
record = Prosite.read(handle)
handle.close()
self.assertEqual(record.accession, 'PS00001')
self.assertEqual(record.name, 'ASN_GLYCOSYLATION')
def test_prodoc_raw(self):
handle = ExPASy.get_prosite_raw('PDOC00001')
record = Prodoc.read(handle)
handle.close()
self.assertEqual(record.accession, 'PDOC00001')
def test_prosite_html(self):
handle = ExPASy.get_prosite_entry('PS00001')
html = handle.read()
self.assertEqual(handle.url,
'https://prosite.expasy.org/cgi-bin/prosite/get-prosite-entry?PS00001')
handle.close()
self.assertTrue('<title>PROSITE: PS00001</title>' in html)
def test_prodoc_html(self):
handle = ExPASy.get_prodoc_entry('PDOC00001')
html = handle.read()
self.assertEqual(handle.url,
'https://prosite.expasy.org/cgi-bin/prosite/get-prodoc-entry?PDOC00001')
handle.close()
self.assertTrue('{PS00001; ASN_GLYCOSYLATION}' in html)
if __name__ == "__main__":
runner = unittest.TextTestRunner(verbosity=2)
unittest.main(testRunner=runner)
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