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|
<?xml version="1.0"?>
<BlastXML2
xmlns="http://www.ncbi.nlm.nih.gov"
xmlns:xs="http://www.w3.org/2001/XMLSchema-instance"
xs:schemaLocation="http://www.ncbi.nlm.nih.gov http://www.ncbi.nlm.nih.gov/data_specs/schema_alt/NCBI_BlastOutput2.xsd"
>
<BlastOutput2>
<report>
<Report>
<program>blastn</program>
<version>BLASTN 2.9.0+</version>
<reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</reference>
<search-target>
<Target>
<db>GPIPE/10090/current/all_top_level GPIPE/10090/current/rna</db>
</Target>
</search-target>
<params>
<Parameters>
<expect>10</expect>
<sc-match>2</sc-match>
<sc-mismatch>-3</sc-mismatch>
<gap-open>5</gap-open>
<gap-extend>2</gap-extend>
<filter>R -d repeatmasker/repeat_9989;m;F;</filter>
</Parameters>
</params>
<results>
<Results>
<search>
<Search>
<query-id>G26684.1</query-id>
<query-title>human STS STS_D11570, sequence tagged site</query-title>
<query-len>285</query-len>
<hits>
<Hit>
<num>1</num>
<description>
<HitDescr>
<id>gi|372099107|ref|NC_000069.6|</id>
<accession>NC_000069</accession>
<title>Mus musculus strain C57BL/6J chromosome 3, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>160039680</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>40.9604</bit-score>
<score>44</score>
<evalue>0.375311</evalue>
<identity>30</identity>
<query-from>134</query-from>
<query-to>166</query-to>
<query-strand>Plus</query-strand>
<hit-from>101449177</hit-from>
<hit-to>101449144</hit-to>
<hit-strand>Minus</hit-strand>
<align-len>34</align-len>
<gaps>1</gaps>
<qseq>GAATCCTAGAGGCTTGATTGGCCCAGG-CTGCTG</qseq>
<hseq>GAATCCTAGAGGCTGGACTGGCCCTGGCCTGCTG</hseq>
<midline>|||||||||||||| || |||||| || ||||||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>2</num>
<description>
<HitDescr>
<id>gi|372099103|ref|NC_000073.6|</id>
<accession>NC_000073</accession>
<title>Mus musculus strain C57BL/6J chromosome 7, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>145441459</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>40.9604</bit-score>
<score>44</score>
<evalue>0.375311</evalue>
<identity>26</identity>
<query-from>205</query-from>
<query-to>233</query-to>
<query-strand>Plus</query-strand>
<hit-from>131772185</hit-from>
<hit-to>131772157</hit-to>
<hit-strand>Minus</hit-strand>
<align-len>29</align-len>
<gaps>0</gaps>
<qseq>GAAAGGAAATNAAAATGGAAAGTTCTTGT</qseq>
<hseq>GAAAGGAAAAAAAAATGGAAAGTTCTGGT</hseq>
<midline>||||||||| ||||||||||||||| ||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>3</num>
<description>
<HitDescr>
<id>gi|372099106|ref|NC_000070.6|</id>
<accession>NC_000070</accession>
<title>Mus musculus strain C57BL/6J chromosome 4, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>156508116</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>40.0587</bit-score>
<score>43</score>
<evalue>1.30996</evalue>
<identity>23</identity>
<query-from>62</query-from>
<query-to>85</query-to>
<query-strand>Plus</query-strand>
<hit-from>9607562</hit-from>
<hit-to>9607539</hit-to>
<hit-strand>Minus</hit-strand>
<align-len>24</align-len>
<gaps>0</gaps>
<qseq>CCAACACAGGCCAGCGACTTCTGG</qseq>
<hseq>CCAACACAGGCCAGCGGCTTCTGG</hseq>
<midline>|||||||||||||||| |||||||</midline>
</Hsp>
<Hsp>
<num>2</num>
<bit-score>37.3537</bit-score>
<score>40</score>
<evalue>4.57222</evalue>
<identity>28</identity>
<query-from>242</query-from>
<query-to>272</query-to>
<query-strand>Plus</query-strand>
<hit-from>142902532</hit-from>
<hit-to>142902563</hit-to>
<hit-strand>Plus</hit-strand>
<align-len>32</align-len>
<gaps>1</gaps>
<qseq>GCCTGACATGG-GTAGCTGCTCAATAAATGCT</qseq>
<hseq>GCCTGGCATGAAGTAACTGCTCAATAAATGCT</hseq>
<midline>||||| |||| ||| ||||||||||||||||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>4</num>
<description>
<HitDescr>
<id>gi|372099108|ref|NC_000068.7|</id>
<accession>NC_000068</accession>
<title>Mus musculus strain C57BL/6J chromosome 2, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>182113224</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>39.157</bit-score>
<score>42</score>
<evalue>1.30996</evalue>
<identity>27</identity>
<query-from>239</query-from>
<query-to>269</query-to>
<query-strand>Plus</query-strand>
<hit-from>3799647</hit-from>
<hit-to>3799677</hit-to>
<hit-strand>Plus</hit-strand>
<align-len>31</align-len>
<gaps>0</gaps>
<qseq>AAGGCCTGACATGGGTAGCTGCTCAATAAAT</qseq>
<hseq>AAGTCCTGGCATGAGTAGTTGCTCAATAAAT</hseq>
<midline>||| |||| |||| |||| ||||||||||||</midline>
</Hsp>
<Hsp>
<num>2</num>
<bit-score>38.2554</bit-score>
<score>41</score>
<evalue>4.57222</evalue>
<identity>23</identity>
<query-from>211</query-from>
<query-to>235</query-to>
<query-strand>Plus</query-strand>
<hit-from>70278960</hit-from>
<hit-to>70278984</hit-to>
<hit-strand>Plus</hit-strand>
<align-len>25</align-len>
<gaps>0</gaps>
<qseq>AAATNAAAATGGAAAGTTCTTGTAG</qseq>
<hseq>AAATGAAAATGGAAAGTTCTTATAG</hseq>
<midline>|||| |||||||||||||||| |||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>5</num>
<description>
<HitDescr>
<id>gi|372099097|ref|NC_000079.6|</id>
<accession>NC_000079</accession>
<title>Mus musculus strain C57BL/6J chromosome 13, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>120421639</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>39.157</bit-score>
<score>42</score>
<evalue>1.30996</evalue>
<identity>25</identity>
<query-from>207</query-from>
<query-to>234</query-to>
<query-strand>Plus</query-strand>
<hit-from>26806584</hit-from>
<hit-to>26806557</hit-to>
<hit-strand>Minus</hit-strand>
<align-len>28</align-len>
<gaps>0</gaps>
<qseq>AAGGAAATNAAAATGGAAAGTTCTTGTA</qseq>
<hseq>AAGGACATCAAAATGGAAAGTTCTTCTA</hseq>
<midline>||||| || |||||||||||||||| ||</midline>
</Hsp>
<Hsp>
<num>2</num>
<bit-score>37.3537</bit-score>
<score>40</score>
<evalue>4.57222</evalue>
<identity>32</identity>
<query-from>234</query-from>
<query-to>273</query-to>
<query-strand>Plus</query-strand>
<hit-from>56840340</hit-from>
<hit-to>56840301</hit-to>
<hit-strand>Minus</hit-strand>
<align-len>40</align-len>
<gaps>0</gaps>
<qseq>AGCGCAAGGCCTGACATGGGTAGCTGCTCAATAAATGCTA</qseq>
<hseq>AGCGCAAGGCCTGACATAGGAAAATGTTCAGTGAATACTA</hseq>
<midline>||||||||||||||||| || | || ||| | ||| |||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>6</num>
<description>
<HitDescr>
<id>gi|372099098|ref|NC_000078.6|</id>
<accession>NC_000078</accession>
<title>Mus musculus strain C57BL/6J chromosome 12, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>120129022</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>38.2554</bit-score>
<score>41</score>
<evalue>4.57222</evalue>
<identity>22</identity>
<query-from>49</query-from>
<query-to>71</query-to>
<query-strand>Plus</query-strand>
<hit-from>113030663</hit-from>
<hit-to>113030685</hit-to>
<hit-strand>Plus</hit-strand>
<align-len>23</align-len>
<gaps>0</gaps>
<qseq>CATCCATTCACACCCAACACAGG</qseq>
<hseq>CATCCATTCACACCCAGCACAGG</hseq>
<midline>|||||||||||||||| ||||||</midline>
</Hsp>
<Hsp>
<num>2</num>
<bit-score>37.3537</bit-score>
<score>40</score>
<evalue>4.57222</evalue>
<identity>28</identity>
<query-from>231</query-from>
<query-to>262</query-to>
<query-strand>Plus</query-strand>
<hit-from>108990272</hit-from>
<hit-to>108990242</hit-to>
<hit-strand>Minus</hit-strand>
<align-len>32</align-len>
<gaps>1</gaps>
<qseq>TGTAGCGCAAGGCCTGACATGGGTAGCTGCTC</qseq>
<hseq>TGTAGCTCTAGGCCTGACATGGGT-GCTGGTC</hseq>
<midline>|||||| | ||||||||||||||| |||| ||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>7</num>
<description>
<HitDescr>
<id>gi|372099109|ref|NC_000067.6|</id>
<accession>NC_000067</accession>
<title>Mus musculus strain C57BL/6J chromosome 1, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>195471971</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>37.3537</bit-score>
<score>40</score>
<evalue>4.57222</evalue>
<identity>35</identity>
<query-from>87</query-from>
<query-to>129</query-to>
<query-strand>Plus</query-strand>
<hit-from>65190108</hit-from>
<hit-to>65190148</hit-to>
<hit-strand>Plus</hit-strand>
<align-len>43</align-len>
<gaps>2</gaps>
<qseq>GCTCAGCCACAGACATGGTTTGTNACTNTTGAGCTTCTGTTCC</qseq>
<hseq>GCTCAGCCACATACATGGTTT-TAAGTGTTGAGGCTCT-TTCC</hseq>
<midline>||||||||||| ||||||||| | | | ||||| ||| ||||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>8</num>
<description>
<HitDescr>
<id>gi|372099101|ref|NC_000075.6|</id>
<accession>NC_000075</accession>
<title>Mus musculus strain C57BL/6J chromosome 9, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>124595110</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>37.3537</bit-score>
<score>40</score>
<evalue>4.57222</evalue>
<identity>36</identity>
<query-from>238</query-from>
<query-to>284</query-to>
<query-strand>Plus</query-strand>
<hit-from>58227241</hit-from>
<hit-to>58227195</hit-to>
<hit-strand>Minus</hit-strand>
<align-len>47</align-len>
<gaps>0</gaps>
<qseq>CAAGGCCTGACATGGGTAGCTGCTCAATAAATGCTAGTNTGTTATTT</qseq>
<hseq>CAAAGCCTGACAGGTATGACTGCTCAATAAATACTATTTTTTTTTTT</hseq>
<midline>||| |||||||| | | ||||||||||||| ||| | | || |||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>9</num>
<description>
<HitDescr>
<id>gi|372099100|ref|NC_000076.6|</id>
<accession>NC_000076</accession>
<title>Mus musculus strain C57BL/6J chromosome 10, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>130694993</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>37.3537</bit-score>
<score>40</score>
<evalue>4.57222</evalue>
<identity>20</identity>
<query-from>255</query-from>
<query-to>274</query-to>
<query-strand>Plus</query-strand>
<hit-from>119337186</hit-from>
<hit-to>119337205</hit-to>
<hit-strand>Plus</hit-strand>
<align-len>20</align-len>
<gaps>0</gaps>
<qseq>AGCTGCTCAATAAATGCTAG</qseq>
<hseq>AGCTGCTCAATAAATGCTAG</hseq>
<midline>||||||||||||||||||||</midline>
</Hsp>
</hsps>
</Hit>
<Hit>
<num>10</num>
<description>
<HitDescr>
<id>gi|372099094|ref|NC_000082.6|</id>
<accession>NC_000082</accession>
<title>Mus musculus strain C57BL/6J chromosome 16, GRCm38.p4 C57BL/6J</title>
<taxid>10090</taxid>
<sciname>Mus musculus</sciname>
</HitDescr>
</description>
<len>98207768</len>
<hsps>
<Hsp>
<num>1</num>
<bit-score>37.3537</bit-score>
<score>40</score>
<evalue>4.57222</evalue>
<identity>43</identity>
<query-from>175</query-from>
<query-to>228</query-to>
<query-strand>Plus</query-strand>
<hit-from>18854780</hit-from>
<hit-to>18854835</hit-to>
<hit-strand>Plus</hit-strand>
<align-len>56</align-len>
<gaps>2</gaps>
<qseq>GGAGGCAAAGAATCCCTACCTCCT-AGGGGTGA-AAGGAAATNAAAATGGAAAGTT</qseq>
<hseq>GGAGGCAAAGAATCCCTACATTGTGACAGCTGATAAAGAAGGTAAAATGGAAAATT</hseq>
<midline>||||||||||||||||||| | | | | ||| || ||| |||||||||| ||</midline>
</Hsp>
</hsps>
</Hit>
</hits>
<stat>
<Statistics>
<db-num>107382</db-num>
<db-len>3164670549</db-len>
<hsp-len>31</hsp-len>
<eff-space>802980793578</eff-space>
<kappa>0.41</kappa>
<lambda>0.625</lambda>
<entropy>0.78</entropy>
</Statistics>
</stat>
</Search>
</search>
</Results>
</results>
</Report>
</report>
</BlastOutput2>
</BlastXML2>
|
