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EXONERATE TEST DATA FILES
=========================
This directory contains various data files for testing the
Exonerate-related code in Biopython. All files are grouped by
Exonerate release version, from the most recent first.
Exonerate 2.4
-------------
exn_24_m_protein2genome_revcomp_fshifts.exn
exn_24_m_protein2genome_revcomp_fshifts_cigar.exn
exn_24_m_protein2genome_revcomp_fshifts_vulgar.exn
exn_24_m_protein2genome_met_intron.exn
exn_24_m_protein2genome_met_intron_cigar.exn
exn_24_m_protein2genome_met_intron_vulgar.exn
Exonerate 2.2
-------------
exn_22_m_affine_local.exn affine:local model alignment
exn_22_m_affine_local_cigar.exn affine:local model alignment, cigar lines
exn_22_m_affine_local_vulgar.exn affine:local model alignmen, vulgar lines
exn_22_m_cdna2genome.exn cdna2genome model alignment
exn_22_m_cdna2genome_cigar.exn cdna2genome model alignment, cigar lines
exn_22_m_cdna2genome_vulgar.exn cdna2genome model alignment, vulgar lines
exn_22_m_coding2coding.exn coding2coding model alignment
exn_22_m_coding2coding_cigar.exn coding2coding model alignment, cigar lines
exn_22_m_coding2coding_vulgar.exn coding2coding model alignment, vulgar lines
exn_22_m_coding2coding_fshifts.exn coding2coding model alignment, with frameshifts
exn_22_m_cigar_fshifts.exn coding2coding alignment with cigar lines only, frameshifts
exn_22_o_vulgar_fshifts.exn coding2coding alignment with vulgar lines only, frameshifts
exn_22_m_coding2genome.exn coding2genome model alignment
exn_22_m_coding2genome_cigar.exn coding2genome model alignment, cigar lines
exn_22_m_coding2genome_vulgar.exn coding2genome model alignment, vulgar lines
exn_22_m_dna2protein.exn dna2protein model alignment
exn_22_m_dna2protein_cigar.exn dna2protein model alignment, cigar lines
exn_22_m_dna2protein_vulgar.exn dna2protein model alignment, vulgar lines
exn_22_m_est2genome.exn est2genome model alignment
exn_22_m_est2genome_cigar.exn est2genome model alignment, cigar lines
exn_22_m_est2genome_vulgar.exn est2genome model alignment, vulgar lines
exn_22_m_genome2genome.exn genome2genome model alignment
exn_22_o_vulgar_cigar.exn genome2genome alignment with vulgar and cigar lines only
exn_22_o_vulgar.exn genome2genome alignment with vulgar lines only
exn_22_m_ner.exn ner model alignment
exn_22_m_ner_cigar.exn ner model alignment, cigar lines
exn_22_m_ner_vulgar.exn ner model alignment, vulgar lines
exn_22_m_protein2dna.exn protein2dna model alignment
exn_22_m_protein2dna_cigar.exn protein2dna model alignment, cigar lines
exn_22_m_protein2dna_vulgar.exn protein2dna model alignment, vulgar lines
exn_22_m_protein2dna_fshifts.exn protein2dna model alignment, with frameshifts
exn_22_o_cigar_fshifts2.exn protein2dna alignment with cigar lines only, frameshifts
exn_22_o_vulgar_fshifts2.exn protein2dna alignment with vulgar lines only, frameshifts
exn_22_m_protein2genome.exn protein2genome model alignment
exn_22_m_protein2genome_cigar.exn protein2genome model alignment, cigar lines
exn_22_m_protein2genome_vulgar.exn protein2genome model alignment, vulgar lines
exn_22_m_ungapped.exn ungapped model alignment (default)
exn_22_m_ungapped_cigar.exn ungapped model alignment (default), cigar
exn_22_m_ungapped_vulgar.exn ungapped model alignment (default), vulgar
exn_22_m_ungapped_trans.exn ungapped:translated model alignment
exn_22_m_ungapped_trans_cigar.exn ungapped:translated model alignment, cigar
exn_22_m_ungapped_trans_vulgar.exn ungapped:translated model alignment, vulgar
exn_22_q_multiple.exn est2genome, multiple queries, multiple hits and hsps
exn_22_q_multiple_cigar.exn est2genome, multiple queries, multiple hits and hsps, cigar lines only
exn_22_q_multiple_vulgar.exn est2genome, multiple queries, multiple hits and hsps, vulgar lines only
exn_22_q_none.exn est2genome, single query, no results
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