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|
Query 4Y9H:A|PDBID|CHAIN|SEQUENCE
Match_columns 226
No_of_seqs 141 out of 1242
Neff 8.55177
Searched_HMMs 46616
Date Thu Nov 29 16:28:55 2018
Command hhsearch -cpu 8 -i ../results/full.a3m -d /cluster/toolkit/production/databases/hh-suite/mmcif70/pdb70 -o ../results/4Y9H_1.hhr -oa3m ../results/4Y9H_1.a3m -p 50 -Z 250 -loc -z 1 -b 1 -B 250 -ssm 0 -sc 1 -seq 1 -dbstrlen 10000 -norealign -maxres 32000 -contxt /cluster/toolkit/production/bioprogs/tools/hh-suite-build/data/context_data.crf
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 5ZIM_A Bacteriorhodopsin; prot 100.0 2.1E-48 4.4E-53 320.4 0.0 226 1-226 2-227 (228)
2 1M0K_A BACTERIORHODOPSIN; ION 100.0 2.9E-45 6.2E-50 307.4 0.0 226 1-226 19-244 (262)
3 4FBZ_A deltarhodopsin; 7 trans 100.0 4.4E-43 9.5E-48 291.0 0.0 225 2-226 6-231 (241)
4 3WQJ_A Archaerhodopsin-2; 7 tr 100.0 1E-42 2.2E-47 291.6 0.0 226 1-226 16-242 (259)
5 4L35_A Cruxrhodopsin-3; protei 100.0 1.3E-42 2.7E-47 289.7 0.0 224 2-225 5-234 (250)
6 4QI1_A Bacteriorhodopsin-I; Ba 100.0 2.2E-42 4.8E-47 289.9 0.0 225 2-226 14-239 (262)
7 1H2S_A SENSORY RHODOPSIN II, S 100.0 4.4E-42 9.4E-47 282.3 0.0 217 2-224 2-218 (225)
8 3AM6_A rhodopsin-2; seven tran 100.0 4.6E-42 9.9E-47 282.9 0.0 220 1-225 6-225 (229)
9 5JJF_A sensory rhodopsin; sens 100.0 1.8E-41 3.8E-46 282.5 0.0 215 4-224 3-217 (248)
10 5AX0_A Rhodopsin I; PROTON TRA 100.0 5E-41 1.1E-45 279.2 0.0 216 7-225 22-239 (244)
11 1XIO_A ANABAENA SENSORY RHODOP 100.0 1.2E-40 2.5E-45 279.5 0.0 220 2-226 2-225 (261)
12 5B0W_G Halorhodopsin; seven tr 100.0 1.4E-40 3.1E-45 282.6 0.0 216 7-224 37-269 (291)
13 2JAF_A HALORHODOPSIN; CHROMOPH 100.0 2.2E-40 4.8E-45 279.5 0.0 217 7-226 32-257 (274)
14 1C8S_A BACTERIORHODOPSIN MUTAN 100.0 2.6E-40 5.5E-45 266.4 0.0 195 1-217 2-196 (196)
15 4XTL_A KR2; ion pump, membrane 100.0 4.7E-39 1E-43 273.2 0.0 223 1-224 25-268 (288)
16 5ZIH_B Sensory opsin A,Chrimso 100.0 1.3E-38 2.9E-43 275.6 0.0 217 1-226 88-311 (347)
17 4JQ6_C Proteorhodopsin; retiny 100.0 3.1E-38 6.6E-43 261.1 0.0 208 6-224 13-226 (235)
18 5G28_A CHLORIDE PUMPING RHODOP 100.0 3.9E-38 8.4E-43 265.9 0.0 216 7-224 24-251 (275)
19 4HYJ_A Rhodopsin; Seven-helica 100.0 4E-38 8.6E-43 263.7 0.0 222 1-224 8-238 (258)
20 4KNF_D Blue-light absorbing pr 100.0 4.4E-38 9.4E-43 263.8 0.0 214 1-224 27-246 (261)
21 5AZD_C Thermophilic rhodopsin; 100.0 6.6E-38 1.4E-42 263.8 0.0 216 8-224 19-246 (268)
22 3DDL_A Xanthorhodopsin; rhodop 100.0 7E-38 1.5E-42 264.2 0.0 217 7-224 19-253 (273)
23 3UG9_A Archaeal-type opsin 1, 100.0 6.1E-37 1.3E-41 263.9 0.0 213 5-224 69-286 (333)
24 5JSI_A Nitrate/nitrite sensor 100.0 1E-36 2.2E-41 249.6 0.0 203 6-224 7-213 (220)
25 6CSM_D GtACR1; rhodopsin, chan 100.0 2.7E-36 5.9E-41 255.0 0.0 212 1-224 27-248 (277)
26 6EYU_B Bacteriorhodopsin; Reti 100.0 5.8E-36 1.2E-40 247.0 0.0 207 1-224 9-226 (232)
27 1BCT_A BACTERIORHODOPSIN (FRAG 99.3 1.4E-15 3E-20 102.0 0.0 68 159-226 2-69 (69)
28 1BHA_A BACTERIORHODOPSIN (PROT 98.4 2E-10 4.3E-15 77.3 0.0 65 1-66 6-71 (71)
29 5ABB_Z PROTEIN TRANSLOCASE SUB 96.5 3.3E-05 7.1E-10 51.2 0.0 51 8-59 15-65 (69)
No 1
>5ZIM_A Bacteriorhodopsin; proton pump, membrane protein, PROTON; HET: L2P, RET; 1.25A {Halobacterium salinarum}; Related PDB entries: 1R84_A 1KG8_A 1KME_B 1KGB_A 1KG9_A 1KME_A 4X31_A 5ZIL_A 1E0P_A 4X32_A 5ZIN_A 1S53_B 1S51_B 1S53_A 1S54_A 1F50_A 1S54_B 1S51_A 1F4Z_A 5J7A_A 1S52_B 1S52_A 4Y9H_A 3T45_A 3T45_C 3T45_B 1C3W_A 1L0M_A
Probab=100.00 E-value=2.1e-48 Score=320.44 Aligned_cols=226 Identities=100% Similarity=1.574 Sum_probs=0.0 Template_Neff=8.500
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 80 (226)
++++|+|+++++++|.+++++|+.++++++++++|++++++++++.+++++|+.|++|.+...+++++++||+++.||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~va~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 81 (228)
T 5ZIM_A 2 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 81 (228)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEEEEEETHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCceeeccCCCCCcchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRP 160 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~ 160 (226)
|++|+|++++.++.++|.+++++...++.|.+|+++|++|++.++++.||.++++|+++++.+++.++++.++.++++++
T Consensus 82 W~ittPlll~~l~~l~~~~~~~~~~~~~~~~~mi~~g~~g~~~~~~~~~w~~~~~s~~~~~~v~~~l~~~~~~~~~~~~~ 161 (228)
T 5ZIM_A 82 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRP 161 (228)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSCTTSSSSCCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 161 EVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 161 ~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
+.++.++.++.++++.|.+||++|++++||.|++|++.|++.|+++|+++|++|+++++.+++++|
T Consensus 162 ~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~i~y~ilDi~~K~~f~~~l~~~~~~~~ 227 (228)
T 5ZIM_A 162 EVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 227 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSCHHHHHHHHHHHHCCCCCCHHHHHHTSGGGSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 2
>1M0K_A BACTERIORHODOPSIN; ION PUMP, MEMBRANE PROTEIN, RETINAL; HET: RET, SQU, LI1; 1.43A {Halobacterium salinarum} SCOP: f.13.1.1; Related PDB entries: 4XXJ_B 4XXJ_A 4XXJ_C 6G7L_A 5VN7_B 1M0M_A 4HWL_A 2ZFE_A 4FPD_A 6G7J_A 3VHZ_A 1M0L_A 2ZZL_A 4HYX_A 4HWL_B 4HYX_B 6G7K_A 6G7I_A 3VI0_A 5VN7_A 5VN9_B 5VN9_A 3COC_B 2I21_A 5B34_A 3HAQ_A 1S8L_A 1TN0_B 1O0A_A 1JV6_A 1TN0_A 5BR2_A 2I1X_A 1UCQ_A 1MGY_A 1C8R_A 3HAR_A 1P8U_A 3UTX_A 1Q5I_A 1Q5J_A 1Q5J_B 1JV7_A 1P8I_A 1S8J_A 3COC_A 3HAO_A 1PY6_B 1PXR_B 1Q5I_B 3UTY_A 2NTU_A 1PXS_B 5BR5_A 1PXS_A 3HAS_A 1PXR_A 1TN5_A 2WJL_A 3HAP_A 3COD_A 1TN5_B 3HAO_B 2I20_A 2WJK_A 1R2N_A 3UTV_A 3UTX_B 3HAN_A 1PY6_A 1VJM_A 3UTY_B 5B35_A 3COD_B 3UTW_A 2NTW_A 4OV0_A 1P8H_A 1CWQ_A 6G7H_A 5H2J_A 1BRD_A 5H2H_A 1X0I_1 5A44_A 1QM8_A 1X0S_A 5B6V_A 1BM1_A 1AP9_A 2BRD_A 1IW6_A 3MBV_A 5H2P_A 1QKP_A 5H2O_A 5H2N_A 5B6X_A 1FBB_A 1CWQ_B 4MD2_A 1QKO_A 1IW9_A 1QHJ_A 1AT9_A 1DZE_A 4MD1_A 5H2K_A 1X0K_1 5B6Z_A 5H2L_A 5H2I_A 1FBK_A 1IXF_A 3NS0_A 1BRX_A 3NSB_A 5H2M_A 2AT9_A 5B6Y_A 5B6W_A 5A45_A 1XJI_A 1BRR_B 1BRR_A 1BRR_C
Probab=100.00 E-value=2.9e-45 Score=307.43 Aligned_cols=226 Identities=100% Similarity=1.574 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 80 (226)
..++|.|+++++++|++++++|..+++|.+++++|++++++++++.+++++|+.|++|.+...++.++.+||+++.||+|
T Consensus 19 ~~~~~~~~~~~~~~m~~~~l~f~~~~~~~~~~~~r~~~~l~~~i~~iaa~~Y~~ma~g~g~~~~~~~~~~r~v~~~RYvd 98 (262)
T 1M0K_A 19 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 98 (262)
T ss_dssp CSTTHHHHHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEETTEEEEECTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCceeccCCCCcCccchHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRP 160 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~ 160 (226)
|++|||++++.++.++|.+++.+...++.|.+|+.+|+.|++..+...||.|+.+|+++|+.++|.++++.++.++++++
T Consensus 99 W~iTtPlll~~l~~la~~~~~~~~~~v~~~~~mi~~G~~g~~~~~~~~kw~~~~~s~~~f~~v~~~l~~~~~~~a~~~~~ 178 (262)
T 1M0K_A 99 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRP 178 (262)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHCC-----CCCH
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 161 EVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 161 ~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
+.++.+++++.+++++|.+||++|++++||.|++|++.|++.|+++|+++|++|+++++..+++.+
T Consensus 179 ~~~~~~~~l~~~~~v~W~~YPi~w~l~~eg~~~is~~~e~i~y~ilDv~~K~~f~~~ll~~~~~~~ 244 (262)
T 1M0K_A 179 EVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 244 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSCHHHHHHHHHHHHHCCCCCHHHHHHHSGGGCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 3
>4FBZ_A deltarhodopsin; 7 transmembrane helices, light-driven proton; HET: RET, L2P, 22B, SQL, BNG, SO4; 2.7A {Haloterrigena thermotolerans} SCOP: f.13.1.0
Probab=100.00 E-value=4.4e-43 Score=291.03 Aligned_cols=225 Identities=55% Similarity=0.956 Sum_probs=0.0 Template_Neff=8.200
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHH
Q 4Y9H:A|PDBID|C 2 RPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADW 81 (226)
Q Consensus 2 ~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W 81 (226)
.+...|+|+++++|.+++++|+.++++++++++|.++.++++++.+++++|+.|++|+|....+.++++|++++.||+||
T Consensus 6 ~~~~~~lw~~~~~~~~~~~~f~~~~~~~~~~~~R~~~~l~~~i~~va~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W 85 (241)
T 4FBZ_A 6 GPESIWLWIGTIGMTLGTLYFVGRGRGVRDRKMQEFYIITTFITTIAAAMYFAMATGFGVTEVVVGDEALTIYWARYADW 85 (241)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEECSSCEEEECTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEecCCcceeeeHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHH
Q 4Y9H:A|PDBID|C 82 LFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPE 161 (226)
Q Consensus 82 ~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~~ 161 (226)
++|+|++++++++++|.++++....++.+.+|+.+|+.|+..+++..||.++++|+++|+.+++.+.++.++.+++++++
T Consensus 86 ~iTtPlll~~l~~lag~~~~~~~~~~~~~~~mi~~G~~g~~~~~~~~~w~~~~~s~~~~~~i~~~l~~~~~~~a~~~~~~ 165 (241)
T 4FBZ_A 86 LFTTPLLLLDLGLLAGANRNTIATLIGLDVFMIGTGMIAAFAATPGTRIAWWGISTGALLALLYVLVGTLSKDARGQSPE 165 (241)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 162 VASTFKVLRNVTVVLWSAYPVVWLIGSEG-AGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 162 ~~~~~~~l~~~~~i~W~~YPi~w~l~~~g-~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
.++.++.++.++++.|.+||++|+++++| .|.+|++.|++.|+++|+++|++|+++++.++++.+
T Consensus 166 ~~~~~~~l~~~~~v~W~~YPi~w~l~~~g~~~~i~~~~~~i~~~vlDv~~K~~fg~~l~~~~~~~~ 231 (241)
T 4FBZ_A 166 VASLFGRLRNLVIVLWLLYPVVWILGTEGTFGILPLYWETAAFMVLDLSAKVGFGVVLLRSRSVLR 231 (241)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSGGGSSCCSCHHHHHHHHHHHHHCCCCCHHHHHSSCHHHHG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCChHHHHHHHHHHHHHHHHhHHHHHHHhhHHHH
No 4
>3WQJ_A Archaerhodopsin-2; 7 trans-membrane helices, light-driven proton; HET: RET, L3P, L2P, 22B, SQL, L4P; 1.8A {Halobacterium}; Related PDB entries: 2Z55_B 2EI4_A 2Z55_D 1VGO_A 2Z55_E 1VGO_B 2Z55_A 1UAZ_A 1UAZ_B
Probab=100.00 E-value=1e-42 Score=291.62 Aligned_cols=226 Identities=57% Similarity=1.005 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeec-cCCCCCcchHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVP-FGGEQNPIYWARYA 79 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~-~~~~~~~v~~~RYv 79 (226)
.++...|++.++++|.+++++|...+++.+++++|++++++.+++.+++++|+.|++|.+....+ .++..|++++.||+
T Consensus 16 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~vaa~~Y~~ma~g~g~~~~~~~~~~~r~v~~~RYv 95 (259)
T 3WQJ_A 16 GRPETLWLGIGTLLMLIGTFYFIARGWGVTDKEAREYYAITILVPGIASAAYLAMFFGIGVTEVELASGTVLDIYYARYA 95 (259)
T ss_dssp SCTTHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEEEECTTSCEEEECTHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeEecCCCCeeeecHHHHH
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCC
Q 4Y9H:A|PDBID|C 80 DWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMR 159 (226)
Q Consensus 80 ~W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~ 159 (226)
||++|||+++++++.++|.+++.+...++.|.+|+.+|++|+...++..||.|+.+|+++|+.++|.++++.++.+++++
T Consensus 96 ~W~iTtPlll~~l~~la~~~~~~~~~~v~~~~~Mi~~G~~g~~~~~~~~~~~~~~~g~~~f~~v~~~l~~~~~~~a~~~~ 175 (259)
T 3WQJ_A 96 DWLFTTPLLLLDLALLAKVDRVTIGTLIGVDALMIVTGLIGALSKTPLARYTWWLFSTIAFLFVLYYLLTSLRSAAAKRS 175 (259)
T ss_dssp HHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 160 PEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 160 ~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
++.++.++.++.+++++|.+||++|++++||.|+++++.|+++|+++|+++|++|+++++..+++.+
T Consensus 176 ~~~~~~~~~l~~~~~v~W~~YPivw~l~~~g~~~i~~~~e~i~~~ilDv~~K~~f~~~l~~~~~~~~ 242 (259)
T 3WQJ_A 176 EEVRSTFNTLTALVAVLWTAYPILWIVGTEGAGVVGLGIETLAFMVLDVTAKVGFGFVLLRSRAILG 242 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCSCHHHHHHHHHHHHHCCCCCHHHHHHTCTTC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 5
>4L35_A Cruxrhodopsin-3; protein-bacterioruberin complex, seven transmembrane alpha; HET: RET, 22B; 2.1A {Haloarcula vallismortis} SCOP: f.13.1.0; Related PDB entries: 4PXK_A 4JR8_A
Probab=100.00 E-value=1.3e-42 Score=289.73 Aligned_cols=224 Identities=55% Similarity=0.964 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHH
Q 4Y9H:A|PDBID|C 2 RPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADW 81 (226)
Q Consensus 2 ~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W 81 (226)
.+...|+|+++++|.+++++|....++++++++|.+++++.+++.+++++|+.|++|.+...++.++++||+++.||+||
T Consensus 5 ~~~~~~lw~~~~~~~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~va~~~Y~~ma~~~g~~~~~~~~~~r~v~~~RYv~W 84 (250)
T 4L35_A 5 EGEAIWLWLGTAGMFLGMLYFIARGWGETDSRRQKFYIATILITAIAFVNYLAMALGFGLTIVEIAGEQRPIYWARYSDW 84 (250)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEETTEEEEEETHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHHHHHHHHHcCCCeeEeecCCcceeeeHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHccc------chHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 4Y9H:A|PDBID|C 82 LFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKV------YSYRFVWWAISTAAMLYILYVLFFGFTSKA 155 (226)
Q Consensus 82 ~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~------~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~ 155 (226)
++|+|++++.+++++|.+++.+...++.+.+|+.+|+++++..+ +..||.++.+|+++|+.++|.++++.++..
T Consensus 85 ~ittPlll~~l~~lag~~~~~~~~~~~~~~~mi~~g~~~~~~~~~~~~~~~~~~w~~~~~s~~~~~~i~~~l~~~~~~~~ 164 (250)
T 4L35_A 85 LFTTPLLLYDLGLLAGADRNTISSLVSLDVLMIGTGLVATLSAGSGVLSAGAERLVWWGISTAFLLVLLYFLFSSLSGRV 164 (250)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHcccCCccCcchHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 4Y9H:A|PDBID|C 156 ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIF 225 (226)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~ 225 (226)
++++++.++.++.++.+++++|.+||++|.++++|.|+++++.|+++|+++|+++|++|+++++..+++.
T Consensus 165 ~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~g~~~i~~~~e~i~~~ilDv~~K~~f~~~ll~~~~~~ 234 (250)
T 4L35_A 165 ADLPSDTRSTFKTLRNLVTVVWLVYPVWWLVGTEGIGLVGIGIETAGFMVIDLVAKVGFGIILLRSHGVL 234 (250)
T ss_dssp HTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCHHHHHHHHHHHHHCCCCCHHHHHTSCHHHH
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchh
No 6
>4QI1_A Bacteriorhodopsin-I; Bacteriorhodopsin, proton pump, Membrane, MEMBRANE; HET: MPG, RET; 1.85A {Haloquadratum walsbyi} SCOP: f.13.1.0; Related PDB entries: 5ITC_A 5KKH_A 5ITE_B 5KKH_C 5ITE_C 5ITC_C 5ITC_B 5KKH_B 5ITE_A 4QI1_B 4WAV_B 4WAV_A 4QID_B 4QID_A 4QI1_C
Probab=100.00 E-value=2.2e-42 Score=289.87 Aligned_cols=225 Identities=56% Similarity=0.948 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeecc-CCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 2 RPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPF-GGEQNPIYWARYAD 80 (226)
Q Consensus 2 ~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~-~~~~~~v~~~RYv~ 80 (226)
.....|+|+++++|++++++|..++++.+++++|++++++.+++.+++++|+.|++|.|....+. ++..|++++.||+|
T Consensus 14 ~~~~~~~~~~~~~m~~~~l~f~~~~~~~~~~~~r~~~~l~~~i~~vaa~~Y~~ma~g~g~~~~~~~~g~~r~v~~~RYv~ 93 (262)
T 4QI1_A 14 EGEGIWLALGTIGMLLGMLYFIADGLDVQDPRQKEFYVITILIPAIAAASYLSMFFGFGLTEVSLANGRVVDVYWARYAD 93 (262)
T ss_dssp SSTHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTEEEEECTTSCEEEEETHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHHHcCCCceeeeccCCCeeeeeHHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRP 160 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~ 160 (226)
|++|||++++.++.++|.+++.+...++.|.+|+.+|++|+...+++.||.++.+|+++|+.+++.++...++..+++++
T Consensus 94 W~iTtPlll~~l~llag~~~~~~~~~i~~~~~Mi~~G~~g~~~~~~~~~w~~~~is~~~~~~v~~~l~~~~~~~~~~~~~ 173 (262)
T 4QI1_A 94 WLFTTPLLLLDIGLLAGASQRDIGALVGIDAFMIVTGLVATLTKVVVARYAFWTISTISMVFLLYYLVAVFGEAVSDADE 173 (262)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHTTSCH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 161 EVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 161 ~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
+.++.++.++.+++++|.+||++|+++++|.|+++++.|+++|+++|+++|++|+++++.+++...
T Consensus 174 ~~~~~~~~L~~~~~v~W~~YPivw~l~~~G~~~is~~~e~i~~~vlDil~K~~fg~~ll~~~~~~~ 239 (262)
T 4QI1_A 174 DTRSTFNALRNIILVTWAIYPVAWLVGTEGLALTGLYGETLLFMVLDLVAKVGFGFILLRSRAIMG 239 (262)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCHHHHHHHHHHHHCCCCCCHHHHHHTCGGGC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCcccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 7
>1H2S_A SENSORY RHODOPSIN II, SENSORY RHODOPSIN; MEMBRANE PROTEIN, MENBRANE PROTEIN COMPLEX; HET: BOG, RET; 1.93A {NATRONOMONAS PHARAONIS} SCOP: f.13.1.1; Related PDB entries: 1JGJ_A
Probab=100.00 E-value=4.4e-42 Score=282.32 Aligned_cols=217 Identities=29% Similarity=0.533 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHH
Q 4Y9H:A|PDBID|C 2 RPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADW 81 (226)
Q Consensus 2 ~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W 81 (226)
.++..++|+++++|.+++++|....+|.+ +++|+++++...++.+++++|+.|++|.+.... ++|++++.||+||
T Consensus 2 ~~~~~~~w~~~~~~~~~~~~f~~~~~~~~-~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~----~~~~~~~~RY~~W 76 (225)
T 1H2S_A 2 VGLTTLFWLGAIGMLVGTLAFAWAGRDAG-SGERRYYVTLVGISGIAAVAYVVMALGVGWVPV----AERTVFAPRYIDW 76 (225)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHTTTCC-TTTHHHHHHHHHHHHHHHHHHHHHHTTCSEECC----TTSCEEHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHcCCCcccc----CcccccHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHH
Q 4Y9H:A|PDBID|C 82 LFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPE 161 (226)
Q Consensus 82 ~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~~ 161 (226)
++|||++++.++.++|.++++....++.|..|+.+|+.|+..++ +.||.++.+|+++|+.++|.+.++.++.+++++++
T Consensus 77 ~vTtPlll~~l~~lag~~~~~~~~~i~~~~~mi~~G~~~~~~~~-~~~~~~~~i~~~~~~~i~~~l~~~~~~~a~~~~~~ 155 (225)
T 1H2S_A 77 ILTTPLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPG-IERYALFGMGAVAFLGLVYYLVGPMTESASQRSSG 155 (225)
T ss_dssp HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHHHHHHHHHchHHHHHhhcchh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 162 VASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 162 ~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
.++.++.++.+++++|.+||++|+++++|.|+++++.|+..++++|+++|++|+++++..+++
T Consensus 156 ~~~~~~~l~~~~~v~W~~yPi~w~l~~~g~~~i~~~~e~~~~~~~Di~~K~~f~~~l~~~~~~ 218 (225)
T 1H2S_A 156 IKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAAT 218 (225)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHSTTTTCCSCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCccccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 8
>3AM6_A rhodopsin-2; seven trans-membrane, Transport Protein; HET: RET, CLR; 3.2A {Acetabularia acetabulum}; Related PDB entries: 3AM6_B 3AM6_C 3AM6_D
Probab=100.00 E-value=4.6e-42 Score=282.87 Aligned_cols=220 Identities=29% Similarity=0.443 Sum_probs=0.0 Template_Neff=8.400
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 80 (226)
......|+|.++++|.+++++|..++.|+| +++|..++++.+++.+++++|+.|++|.+....+ ++|++++.||+|
T Consensus 6 ~~~g~~~lw~~~~~~~~~~~~f~~~~~r~~-~~~R~~~~l~~~i~~va~~~Y~~ma~~~~~~~~~---~~r~v~~~RYv~ 81 (229)
T 3AM6_A 6 TETGMIAQWIVFAIMAAAAIAFGVAVHFRP-SELKSAYYINIAICTIAATAYYAMAVNYQDLTMN---GERQVVYARYID 81 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHGGGCC---CHHHHHHHHHHHHHHHHHHHHHHHTTTSCCBS---SSBBCCTHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhcccccccC---CcccchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRP 160 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~ 160 (226)
|++|+|+++++++.++|.+++.+...++.|.+|+.+|++|+...+++.||.|+++|+++|+.++|.++++.++.++++++
T Consensus 82 W~vTtPlll~~l~~l~g~~~~~~~~~v~~~~~mi~~g~~~~~~~~~~~~w~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~ 161 (229)
T 3AM6_A 82 WVLTTPLLLLDLIVMTKMGGVMISWVIGADIFMIVFGILGAFEDEHKFKWVYFIAGCVMQAVLTYGMYNATWKDDLKKSP 161 (229)
T ss_dssp HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC--CCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 4Y9H:A|PDBID|C 161 EVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIF 225 (226)
Q Consensus 161 ~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~ 225 (226)
+.++.+++++.++.+.|.+||++|+++ ++.|+++++.|++.|+++|+++|++|+++++..+++.
T Consensus 162 ~~~~~~~~l~~~~~v~W~~YPivw~l~-~g~~~i~~~~e~i~~~vlDv~~K~~f~~~ll~~~~~~ 225 (229)
T 3AM6_A 162 EYHSSYVSLLVFLSILWVFYPVVWAFG-SGSGVLSVDNEAILMGILDVLAKPLFGMGCLIAHETI 225 (229)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHCCC-CCCSSSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcCCCChHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 9
>5JJF_A sensory rhodopsin; sensory rhodopsin II, transducer, membrane; HET: LFA, RET, BOG; 1.9A {Natronomonas pharaonis}; Related PDB entries: 5JJE_A 5JJN_C 2F93_A 5JJN_A 2F95_A 5JJJ_A 2KSY_A 4GYC_A 1GU8_A 1GUE_A 3QDC_A 3QAP_A 1H68_A
Probab=100.00 E-value=1.8e-41 Score=282.46 Aligned_cols=215 Identities=30% Similarity=0.544 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHHHH
Q 4Y9H:A|PDBID|C 4 EWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLF 83 (226)
Q Consensus 4 ~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W~i 83 (226)
+..++|+++++|.+++++|.+.+++.+ +++|+++++.++++.+++++|+.|++|.+.... ++|++++.||+||++
T Consensus 3 ~~~~lw~~~~~m~~~~~~f~~~~~~~~-~~~r~~~~l~~~I~~ia~~~Y~~ma~g~g~~~~----~~r~v~~~RYv~W~~ 77 (248)
T 5JJF_A 3 LTTLFWLGAIGMLVGTLAFAWAGRDAG-SGERRYYVTLVGISGIAAVAYVVMALGVGWVPV----AERTVFAPRYIDWIL 77 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHHHHHHHHHHcCCCceec----CcccccHHHHHHHHH
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHH
Q 4Y9H:A|PDBID|C 84 TTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVA 163 (226)
Q Consensus 84 ttPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~~~~ 163 (226)
|+|+++++++.++|.+++++...++.+.+|+++|+.|+..++ +.||.++++|+++|+.+++.++++.++.+++++++.+
T Consensus 78 TtPlll~~l~~lag~~~~~~~~~i~~~~~mi~~G~~~~~~~~-~~kw~~f~~~~~~f~~v~~~l~~~~~~~a~~~~~~~~ 156 (248)
T 5JJF_A 78 TTPLIVYFLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPG-IERYALFGMGAVAFLGLVYYLVGPMTESASQRSSGIK 156 (248)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhCCc-chHHHHHHHHHHHHHHHHHHHHcHHHHHHhcCCHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 164 STFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 164 ~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
+.++.++.+++++|.+||++|.++++|.|+++++.|..+++++|+++|++|+++++..+++
T Consensus 157 ~~~~~l~~~~~v~W~~YPi~w~l~~~g~~~i~~~~e~~~~~vlDi~~K~~fg~~ll~~~~~ 217 (248)
T 5JJF_A 157 SLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPTVDVALIVYLDLVTKVGFGFIALDAAAT 217 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 10
>5AX0_A Rhodopsin I; PROTON TRANSPORT, MEMBRANE PROTEIN, RETINAL; HET: RET, D10, OLB, R16, D12, C14; 1.521A {Acetabularia acetabulum}; Related PDB entries: 5AX1_A 5AWZ_A
Probab=100.00 E-value=5e-41 Score=279.16 Aligned_cols=216 Identities=27% Similarity=0.447 Sum_probs=0.0 Template_Neff=8.000
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCcee--eccCCCCCcchHHHHHHHHHH
Q 4Y9H:A|PDBID|C 7 WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTM--VPFGGEQNPIYWARYADWLFT 84 (226)
Q Consensus 7 ~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~--~~~~~~~~~v~~~RYv~W~it 84 (226)
|+|+++++|.+++++|+.+++|++ +++|..++++++++.+++++|+.|++|.+... .+.++++|++++.||+||++|
T Consensus 22 ~lw~~~~i~~~~~l~f~~~~~~~~-~~~R~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~r~v~~~RYv~W~iT 100 (244)
T 5AX0_A 22 AQWVVFAVMALAAIVFSIAVQFRP-LPLRLTYYVNIAICTIAATAYYAMAVNGGDNKPTAGTGADERQVIYARYIDWVFT 100 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCEESCGGGCEECCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-cchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCceeeeHHHHHHHHHH
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHH
Q 4Y9H:A|PDBID|C 85 TPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPEVAS 164 (226)
Q Consensus 85 tPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~~~~~ 164 (226)
||++++.++.++|.+++.+...++.|.+|+.+|++|++..+ +.||.|+++|+++|+.++|.++++.++.+++++++.++
T Consensus 101 tPlll~~l~~la~~~~~~~~~~~~~~~~mi~~G~~g~~~~~-~~~w~~~~is~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 179 (244)
T 5AX0_A 101 TPLLLLDLVLLTNMPATMIAWIMGADIAMIAFGIIGAFTVG-SYKWFYFVVGCIMLAVLAWGMINPIFKEELQKHKEYTG 179 (244)
T ss_dssp HHHHHHHHHTTBCCCHHHHHHHHHHHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHHHHHHHHHHHCGGGBSCGGGHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 4Y9H:A|PDBID|C 165 TFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIF 225 (226)
Q Consensus 165 ~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~ 225 (226)
.++.++.++++.|.+||++|++ .++.|+++++.|+++|+++|+++|++|+++++.+++.+
T Consensus 180 ~~~~l~~~~~v~W~~YPi~w~l-~~~g~~i~~~~e~i~~~vlDi~~K~~f~~~ll~~~~~~ 239 (244)
T 5AX0_A 180 AYTTLLIYLIVLWVIYPIVWGL-GAGGHIIGVDVEIIAMGILDLLAKPLYAIGVLITVEVV 239 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC-CCCTCCSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 11
>1XIO_A ANABAENA SENSORY RHODOPSIN; signaling protein, photoreceptor; HET: PEE, RET; 2.0A {Nostoc sp. PCC 7120} SCOP: f.13.1.1; Related PDB entries: 2M3G_C 5UK6_B 5UK6_A 5UK6_C 2M3G_B 2M3G_A 4TL3_B 4TL3_A
Probab=100.00 E-value=1.2e-40 Score=279.52 Aligned_cols=220 Identities=28% Similarity=0.470 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHH
Q 4Y9H:A|PDBID|C 2 RPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADW 81 (226)
Q Consensus 2 ~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W 81 (226)
.++..++|+++++|.+++++|+.++++ |++++|..+.++.+++.+++++|+.|++|.+.... +++++++.||+||
T Consensus 2 ~~~~~~~w~~~~~~~~~~~~f~~~~~~-~~~~r~~~~~~~~~i~~ia~~~Y~~ma~g~g~~~~----~g~~v~~~RYv~W 76 (261)
T 1XIO_A 2 NLESLLHWIYVAGMTIGALHFWSLSRN-PRGVPQYEYLVAMFIPIWSGLAYMAMAIDQGKVEA----AGQIAHYARYIDW 76 (261)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTS-CTTCCHHHHHHHHHHHHHHHHHHHHHHHC-------------CTTHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhCC-CCCCchHHHHHHHHHHHHHHHHHHHHHhccCceec----ccccccHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 4Y9H:A|PDBID|C 82 LFTTPLLLLDLALLVDA----DQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAES 157 (226)
Q Consensus 82 ~ittPlll~~l~~l~~~----~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~ 157 (226)
++|||++++.++.++|. +++.+...++.|++|+.+|++|+...++..||.|+++|+++|+.+++.++...++.+++
T Consensus 77 ~vTtPlll~~l~~la~~~~~~~~~~~~~~i~~~~~mi~~G~~a~~~~~~~~kw~~~~~s~~~f~~il~~l~~~~~~~a~~ 156 (261)
T 1XIO_A 77 MVTTPLLLLSLSWTAMQFIKKDWTLIGFLMSTQIVVITSGLIADLSERDWVRYLWYICGVCAFLIILWGIWNPLRAKTRT 156 (261)
T ss_dssp HHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 158 MRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 158 ~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
++++.++.++.++.++++.|.+||++|+++++|.|.++++.|+++|+++|+++|++|+++++..+++.+
T Consensus 157 ~~~~~~~~~~~L~~~~~v~W~~YPivw~l~~~g~~~is~~~~~i~~~vlDi~~K~~f~~~ll~~~~~~~ 225 (261)
T 1XIO_A 157 QSSELANLYDKLVTYFTVLWIGYPIVWIIGPSGFGWINQTIDTFLFCLLPFFSKVGFSFLDLHGLRNLN 225 (261)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
No 12
>5B0W_G Halorhodopsin; seven trans-membrane helices, retinylidene protein; HET: RET, L3P, BNG, 22B; 1.7A {Natronomonas pharaonis DSM 2160}; Related PDB entries: 5B0W_D 3QBI_D 5ETZ_A 3ABW_D 3A7K_B 5ETZ_D 3QBK_D 3ABW_A 3VVK_C 4QRY_G 5B0W_F 3QBL_A 3ABW_B 3QBG_B 4QRY_E 3QBK_A 3QBI_B 3QBG_D 3VVK_B 3QBG_A 4QRY_C 5B0W_B 4QRY_F 3QBL_D 5B0W_A 3VVK_D 4QRY_A 5B0W_E 3VVK_A 3QBL_B 5ETZ_B 3A7K_A 3QBI_A 4QRY_B 3QBK_B 3VVK_F 3A7K_D 3VVK_E
Probab=100.00 E-value=1.4e-40 Score=282.56 Aligned_cols=216 Identities=32% Similarity=0.598 Sum_probs=0.0 Template_Neff=7.300
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeec----------------cCCCC
Q 4Y9H:A|PDBID|C 7 WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVP----------------FGGEQ 70 (226)
Q Consensus 7 ~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~----------------~~~~~ 70 (226)
++|+++++|.+++++++.+.++.+++++|++++++.+++.+++++|+.|++|.|..... ...++
T Consensus 37 ~lw~~~~i~~l~~~vf~~~s~~~~~~~~R~~~~l~~~i~~va~~aY~~Ma~g~G~~~v~~~~~~~~~~~~~~~g~~~~~~ 116 (291)
T 5B0W_G 37 SLYINIALAGLSILLFVFMTRGLDDPRAKLIAVSTILVPVVSIASYTGLASGLTISVLEMPAGHFAEGSSVMLGGEEVDG 116 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECCCTTCTTTTCBCCBTTBCCBS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEecccccccCCceeeecCCccCc
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccc-hHHHHHHHHHHHHHHHHHHHHHH
Q 4Y9H:A|PDBID|C 71 NPIYWARYADWLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVY-SYRFVWWAISTAAMLYILYVLFF 149 (226)
Q Consensus 71 ~~v~~~RYv~W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~-~~~~~~~~~s~~~~~~i~~~l~~ 149 (226)
|++++.||+||++|+|++++.+++++|.+++.+...++.+++|+.+|++|++.+++ ..||.|+++|+++|+.+++.+.+
T Consensus 117 r~v~~~RYv~W~iTtPlll~~l~llag~~~~~i~~~v~~~~~mi~~Gl~gal~~~~~~~kw~~f~~g~~~~~~i~~~l~~ 196 (291)
T 5B0W_G 117 VVTMWGRYLTWALSTPMILLALGLLAGSNATKLFTAITFDIAMCVTGLAAALTTSSHLMRWFWYAISCACFIVVLYILLV 196 (291)
T ss_dssp EEECTHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred eeccHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 150 GFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
+.++.+++++ .++.++.++.++++.|.+||++|+++++|.|+++++.|+++|+++|+++|++|+++++..+++
T Consensus 197 ~~~~~a~~~~--~~~~~~~l~~~~~v~W~~YPi~w~l~~~G~~vi~~~~e~i~y~ilDi~~K~~f~~~ll~~~~~ 269 (291)
T 5B0W_G 197 EWAQDAKAAG--TADIFSTLKLLTVVMWLGYPIVWALGVEGVAVLPVGYTSWAYSALDIVAKYIFAFLLLNYLTS 269 (291)
T ss_dssp CHHHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHBTTTTCSBCHHHHHHHHHHHHCCCCCCHHHHHHHHHTT
T ss_pred HHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 13
>2JAF_A HALORHODOPSIN; CHROMOPHORE, CHLORIDE PUMP, ION TRANSPORT; HET: BOG, RET, PLM; 1.7A {HALOBACTERIUM SALINARIUM} SCOP: f.13.1.1; Related PDB entries: 2JAG_A 5AHZ_A 5G36_A 5AHY_A 1E12_A
Probab=100.00 E-value=2.2e-40 Score=279.46 Aligned_cols=217 Identities=34% Similarity=0.606 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeecc------CCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 7 WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPF------GGEQNPIYWARYAD 80 (226)
Q Consensus 7 ~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~------~~~~~~v~~~RYv~ 80 (226)
|+|+++++|.+++++|+...+|.+++++|.+++++++++.+++++|+.|++|+|...++. .+++|++++.||+|
T Consensus 32 ~lw~~~~~~~~~~l~f~~~~~~~~~~~~R~~~~l~~~i~~iaa~~Y~~ma~g~g~~~v~~~~~~~~~~~~~~~~~~RYvd 111 (274)
T 2JAF_A 32 SLWVNVALAGIAILVFVYMGRTIRPGRPRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAGEMVRSQWGRYLT 111 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECCTTSTTTTSEEEECHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHHHHHcCCCceeeecccCCcccCCeEeeeHHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccch--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhC
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYS--YRFVWWAISTAAMLYILYVLFFGFTSKAESM 158 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~--~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~ 158 (226)
|++|+|+++++++.++|.+++.+...++.+.+|+.+|++|+...+ . .||.|+++|+++|+.+++.++++.++.++
T Consensus 112 W~vTtPlll~~l~~lag~~~~~~~~~v~~~~~mi~~g~~g~~~~~-~~~~kw~~~~is~~~~~~i~~~l~~~~~~~a~-- 188 (274)
T 2JAF_A 112 WALSTPMILLALGLLADVDLGSLFTVIAADIGMCVTGLAAAMTTS-ALLFRWAFYAISCAFFVVVLSALVTDWAASAS-- 188 (274)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHH--
T ss_pred HHhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcCC-chhhHHHHHHHHHHHHHHHHHHHHhHHHHhcC--
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 159 RPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIV-PLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 159 ~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i-~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
+++.++.++.++.++++.|.+||++|+++++|.|++ +++.|+++|+++|+++|++|+++++..+++.+
T Consensus 189 ~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~G~~~i~s~~~e~i~y~ilDv~~K~~fg~~ll~~~~~~~ 257 (274)
T 2JAF_A 189 SAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGLALVQSVGATSWAYSVLDVFAKYVFAFILLRWVANNE 257 (274)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHTH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
No 14
>1C8S_A BACTERIORHODOPSIN MUTANT/LIPID COMPLEX; ION PUMP, MEMBRANE PROTEIN, RETINAL; HET: LI1, SQU, RET; 2.0A {Halobacterium salinarum} SCOP: f.13.1.1
Probab=100.00 E-value=2.6e-40 Score=266.44 Aligned_cols=195 Identities=99% Similarity=1.599 Sum_probs=0.0 Template_Neff=8.100
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 80 (226)
+++++.|+++++++|.+++++|+.+++|.+++++|++++++..++.+++++|+.|++|.+...+++++++||+++.||+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~va~~~Y~~ma~~~g~~~~~~~~~~~~~~~~RYv~ 81 (196)
T 1C8S_A 2 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 81 (196)
T ss_dssp CCTTHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCBCCEETTEECCBCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeccCCCCCCcchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRP 160 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~ 160 (226)
|++|+|+++++++.++|.++++....++.|..|+.+|+.|+..++++.||.++.+|+++++.+++.++
T Consensus 82 W~iTtPlll~~l~~l~g~~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~------------ 149 (196)
T 1C8S_A 82 WLFTTPLLLLNLALLVDADQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLF------------ 149 (196)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHH------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 4Y9H:A|PDBID|C 161 EVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLI 217 (226)
Q Consensus 161 ~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~ 217 (226)
.+.++.|.+||++|.+++|+.|++|++.|++.|+++|+++|++|+.+
T Consensus 150 ----------~~~~v~W~~YPi~w~l~~~g~~~i~~~~~~~~~~~~Di~~K~~fg~~ 196 (196)
T 1C8S_A 150 ----------NVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLI 196 (196)
T ss_dssp ----------CHHHHHHHHHHHHHHHSTTTTCCSCHHHHHHHHHHHHHCCCCCHHHC
T ss_pred ----------HHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHhHHhHhcC
No 15
>4XTL_A KR2; ion pump, membrane protein; HET: GOL, LFA, LYR; 1.45A {Dokdonia eikasta}; Related PDB entries: 3X3B_A 3X3C_A 5JRF_A 4XTO_D 4XTN_C 4XTN_H 4XTN_A 4XTO_E 4XTN_B 4XTN_D 4XTO_A 4XTN_G 4XTO_B 4XTN_F 4XTO_C 4XTN_I 4XTN_J 4XTN_E
Probab=100.00 E-value=4.7e-39 Score=273.19 Aligned_cols=223 Identities=22% Similarity=0.327 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccC-------CCCCcc
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFG-------GEQNPI 73 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~-------~~~~~v 73 (226)
......++|+++++|+++++.|+.+++|++ +++|.+++++++++.+++++|+.|++|++....+.+ +++++.
T Consensus 25 ~~~~s~~lw~~~~~~~~~~l~f~~~~~~~~-~~~R~~~~l~~~i~~vaa~~Y~~ma~~~g~~~~~~~~~~~~~~~~~~~~ 103 (288)
T 4XTL_A 25 YQFTSHILTLGYAVMLAGLLYFILTIKNVD-KKFQMSNILSAVVMVSAFLLLYAQAQNWTSSFTFNEEVGRYFLDPSGDL 103 (288)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEETTTTEEEECTTSCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cchhHHHHHHHHHHHHHHHHHHHHHhchhhcccccchhcccccCCCCCc
Q ss_pred --hHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH----HHHHHHHHHHHHHHHHHHccc--chHHHHHHHHHHHHHHHHHH
Q 4Y9H:A|PDBID|C 74 --YWARYADWLFTTPLLLLDLALLVDADQGTIL----ALVGADGIMIGTGLVGALTKV--YSYRFVWWAISTAAMLYILY 145 (226)
Q Consensus 74 --~~~RYv~W~ittPlll~~l~~l~~~~~~~~~----~~v~~~~~mi~~g~~g~~~~~--~~~~~~~~~~s~~~~~~i~~ 145 (226)
.+.||+||++|||++++.++.++|.+++... ..++.|.+|+.+|++|+..++ .+.||.++.+|+++|+.+++
T Consensus 104 ~~~~~RYvdW~vTtPlll~~l~llag~~~~~~~~~~~~~v~~~~~Mi~~G~~g~~~~~~~~~~kw~~f~ig~~~~~~vl~ 183 (288)
T 4XTL_A 104 FNNGYRYLNWLIDVPMLLFQILFVVSLTTSKFSSVRNQFWFSGAMMIITGYIGQFYEVSNLTAFLVWGAISSAFFFHILW 183 (288)
T ss_dssp CCTHHHHHHHHHHHHHHHHHGGGTSCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccC----CCCCC--ChhHHHHHHHHHHHHHHHHHHHHHH
Q 4Y9H:A|PDBID|C 146 VLFFGFTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSE----GAGIV--PLNIETLLFMVLDVSAKVGFGLILL 219 (226)
Q Consensus 146 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~----g~~~i--~~~~~~~~~~ilDi~~K~~f~~~l~ 219 (226)
.++.+.++.+++++++.++.+++++.+++++|.+||++|+++.. |.+++ +.+.++++|+++|+++|++|+++++
T Consensus 184 ~l~~~~~~~a~~~~~~~~~~~~~L~~~~~v~W~~YPivw~l~~~~~~~G~~li~~~~~~~~i~y~ilDv~aK~~fg~~ll 263 (288)
T 4XTL_A 184 VMKKVINEGKEGISPAGQKILSNIWILFLISWTLYPGAYLMPYLTGVDGFLYSEDGVMARQLVYTIADVSSXVIYGVLLG 263 (288)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTCTTSTTSSHHHHHHHHHHHHHHHCCCCCCHHHHHH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHHHHHhHHHHHHHHH
Q ss_pred Hhhhh
Q 4Y9H:A|PDBID|C 220 RSRAI 224 (226)
Q Consensus 220 ~~~~~ 224 (226)
..+.+
T Consensus 264 ~~~~~ 268 (288)
T 4XTL_A 264 NLAIT 268 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
No 16
>5ZIH_B Sensory opsin A,Chrimson; membrane protein, rhodopsin, ion channel; HET: OLC, LYR; 2.6A {Chlamydomonas reinhardtii}; Related PDB entries: 5ZIH_A
Probab=100.00 E-value=1.3e-38 Score=275.60 Aligned_cols=217 Identities=16% Similarity=0.231 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHH---HHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAIT---TLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWAR 77 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~---~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~R 77 (226)
..+...|+|+++++|++++++|++.++|++ +++|.++.++ +.++.+++++|+.|+.+++. ++|++++.|
T Consensus 88 ~~~~~~~lwv~f~~m~~~~l~f~~~~~r~~-~~~r~~~~l~~~~~~I~~ia~~sY~~ma~~~~~-------~gr~v~~~R 159 (347)
T 5ZIH_B 88 KIGAQVCQWIAFSIAIALLTFYGFSAWKAT-CGWEEVYVCCVEVLFVTLEIFKEFSSPATVYLS-------TGNHAYCLR 159 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCC---C-TTHHHHHHHHHHHHHHHHHHHHTTSTTTSEEBT-------TSCEECHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHccCC-CCchhHHHHHHHHHHHHHHHHHHHHHHHHcCcC-------CCccccHHH
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 4Y9H:A|PDBID|C 78 YADWLFTTPLLLLDLALLVDADQ---GTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSK 154 (226)
Q Consensus 78 Yv~W~ittPlll~~l~~l~~~~~---~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~ 154 (226)
|+||++|||++++.+++++|.+. +.+...++.|.+|+++|++|++..+ +.||.|+++|+++|+.+++.+.+..++.
T Consensus 160 YvdWliTtPLLL~~L~lLag~~~~~~~~~~~lv~~d~lMI~~G~~gal~~~-~~kw~~f~is~~~~l~l~~~l~~~~~~a 238 (347)
T 5ZIH_B 160 YFEWLLSCPVILIKLSNLSGLKNDYSKRTMGLIVSCVGMIVFGMAAGLATD-WLKWLLYIVSCIYGGYMYFQAAKCYVEA 238 (347)
T ss_dssp HHHHHHHHHHHHHHHHTCSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 155 AESM-RPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 155 ~~~~-~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
.+++ +++.++.++.++.++++.|.+||++|+++++|.|.++.+.++++|+++|+++|++|+++++..+.+..
T Consensus 239 ~~~~~~~~~~~~~~~L~~l~~v~W~lYPIvw~L~~eG~~~is~~~e~i~y~ilDilsKv~fg~ll~~~~~~i~ 311 (347)
T 5ZIH_B 239 NHSVPKGHCRMVVKLMAYAYFASWGSYPILWAVGPEGLLKLSPYANSIGHSICDIIAXEFWTFLAHHLRIKIH 311 (347)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHHHHTHHHHHHHHSTTTTSCSCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_pred hccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 17
>4JQ6_C Proteorhodopsin; retinylidene protein, ion transport, PROTON; HET: LI1, RET; 2.31A {uncultured bacterium} SCOP: f.13.1.0; Related PDB entries: 4JQ6_A 4JQ6_B
Probab=100.00 E-value=3.1e-38 Score=261.06 Aligned_cols=208 Identities=26% Similarity=0.424 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHHHHHH
Q 4Y9H:A|PDBID|C 6 IWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTT 85 (226)
Q Consensus 6 ~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W~itt 85 (226)
.|+|+++++|+++++++...+++++ +++|.+++++.+++.+++++|+.|+.++.. ++++.++.||+||++||
T Consensus 13 ~~lw~~~~~~~~~~~~~~~~~~~~~-~~~R~~~~l~~~i~~ia~~~Y~~m~~~~~~-------~g~~~~~~RYv~W~~Tt 84 (235)
T 4JQ6_C 13 ISFWLAAAIMLASTVFFFVERSDVP-VKWKTSLTVAGLVTGVAFWHYLYMRGVWIY-------AGETPTVFRYIDWLITV 84 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------CCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHHHHHHHHHHHcchhh-------cCCCCchHHHHHHHhHH
Q ss_pred HHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh--CC
Q 4Y9H:A|PDBID|C 86 PLLLLDLALLVDA----DQGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAES--MR 159 (226)
Q Consensus 86 Plll~~l~~l~~~----~~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~--~~ 159 (226)
|+++++++.+++. +++.+...++.|.+|+.+|++|+...++ ||.|+.+|+++|+.+++.++.+.++.+++ ++
T Consensus 85 Plll~~l~~l~~~~~~~~~~~~~~~~~~~~~mi~~G~~~~~~~~~--~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~ 162 (235)
T 4JQ6_C 85 PLQIIEFYLIIAAVTAISSAVFWKLLIASLVMLIGGFIGEAGLGD--VVVWWIVGMIAWLYIIYEIFLGETAKANAGSGN 162 (235)
T ss_dssp HHHHHHHHHHHC--------CHHHHHHHHHHHHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHhcccc--HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 160 PEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 160 ~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
++.++.++.++.++++.|.+||++|++ .++.+.++++.|+++|+++|+++|++|+++++..+++
T Consensus 163 ~~~~~~~~~l~~~~~v~W~~YPi~w~l-~~~g~~i~~~~e~i~~~ilDv~~K~~f~~~ll~~~~~ 226 (235)
T 4JQ6_C 163 AASQQAFNTIKWIVTVGWAIYPIGYAW-GYFGDGLNEDALNIVYNLADLINKAAFGLAIWAAAMK 226 (235)
T ss_dssp --CTHHHHHHHHCCCCCHHHHHHHHHH-HHSSSSCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 18
>5G28_A CHLORIDE PUMPING RHODOPSIN; SIGNALING PROTEIN; HET: OLA, RET; 1.57A {NONLABENS MARINUS S1-08}; Related PDB entries: 5B2N_A 5G2D_A 5G54_A 5G2C_A 5G2A_A 5FJG_A
Probab=100.00 E-value=3.9e-38 Score=265.93 Aligned_cols=216 Identities=24% Similarity=0.298 Sum_probs=0.0 Template_Neff=7.600
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeecc------CCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 7 WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPF------GGEQNPIYWARYAD 80 (226)
Q Consensus 7 ~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~------~~~~~~v~~~RYv~ 80 (226)
++++++++|.+++++++.+++|++ +++|+.++++++++.+++++|+.|++|++...... .++.+++ +.||+|
T Consensus 24 ~l~~~~~~~~~~~i~f~~~~~~~~-~~~R~~~~l~~~v~~vaal~Y~~ma~~~~~~~~~~~~~~~~~~g~~~~-~~RYvd 101 (275)
T 5G28_A 24 LLTMGVGVHFAALIFFLVVSQFVA-PKYRIATALSCIVMVSAGLILNSQAVMWTDAYAYVDGSYQLQDLTFSN-GYRYVN 101 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGSC-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEETTEEEECSSCCCS-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccCC-chhHHHHHHHHHHHHHHHHHHHHHHcccccceeeeCCccccCCccccc-HHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHHHHHHHHHcccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQG----TILALVGADGIMIGTGLVGALTKVY--SYRFVWWAISTAAMLYILYVLFFGFTSK 154 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~~----~~~~~v~~~~~mi~~g~~g~~~~~~--~~~~~~~~~s~~~~~~i~~~l~~~~~~~ 154 (226)
|++|||++++.+++++|.+++ .+...++.|.+|+.+|++|+..+++ ..||.|+.+|+++|+.+++.++.+.+++
T Consensus 102 W~lTtPlll~~L~llag~~~~~~~~~~~~~i~~~~~mi~~G~~g~~~~~~~~~~~~~w~~~s~~~f~~v~~~l~~~~~~~ 181 (275)
T 5G28_A 102 WMATIPCLLLQLLIVLNLKGKELFSTATWLILAAWGMIITGYVGQLYEVDDIAQLMIWGAVSTAFFVVMNWIVGTKIFKN 181 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 155 AESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
..+++++.++.+++++.+++++|.+||++|++++++.+.++++.|++.|+++|+++|++|+++++..+++
T Consensus 182 ~~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~g~~~is~~~~~i~~~ilDvl~K~~f~~~ll~~~~~ 251 (275)
T 5G28_A 182 RATMLGGTDSTITKVFWLMMFAWTLYPIAYLVPAFMNNADGVVLRQLLFTIADISSKVIYGLMITYIAIQ 251 (275)
T ss_dssp GGGCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_pred HHhccCCchHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 19
>4HYJ_A Rhodopsin; Seven-helical transmembrane protein, Proton pump; HET: RET, LFA; 2.3A {Exiguobacterium sibiricum} SCOP: f.13.1.0; Related PDB entries: 4HYJ_B
Probab=100.00 E-value=4e-38 Score=263.73 Aligned_cols=222 Identities=28% Similarity=0.412 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 80 (226)
+.....++|+++++|.+++++|+..+++.+ +++|.+++++++++.+++++|+.|++|.|....+.+.+.++. +.||+|
T Consensus 8 ~~~~~~~lw~~~~~~~~~~l~f~~~~~~~~-~~~R~~~~l~~~i~~vaa~~Y~~ma~~~g~~~~~~~~~~~~~-~~RYvd 85 (258)
T 4HYJ_A 8 VLATQYMFWVGFVGMAAGTLYFLVERNSLA-PEYRSTATVAALVTFVAAIHYYFMKDAVGTSGLLSEIDGFPT-EIRYID 85 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSGGGSC-TTTHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCGGGCCSCHH-HHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhcccccccccccCCCCc-HHHHhH
Q ss_pred HHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHHHHHHccc-----chHHHHHHHHHHHHHHHHHHHHHHhH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDA----DQGTILALVGADGIMIGTGLVGALTKV-----YSYRFVWWAISTAAMLYILYVLFFGF 151 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~----~~~~~~~~v~~~~~mi~~g~~g~~~~~-----~~~~~~~~~~s~~~~~~i~~~l~~~~ 151 (226)
|++|||++++++++++|. +++.+...++.|.+|+.+|++|+...+ ...||.++.+|+++|+.+++.++++.
T Consensus 86 W~~TtPlll~~l~llag~~~~~~~~~~~~lv~~~~~mi~~G~~g~~~~~~~~~~~~~~~~~f~~s~~~~~~vl~~l~~~~ 165 (258)
T 4HYJ_A 86 WLVTTPLLLVKFPLLLGLKGRLGRPLLTKLVIADVIMIVGGYIGESSINIAGGFTQLGLWSYLIGCFAWIYIIYLLFTNV 165 (258)
T ss_dssp HHHHHHHHHTHHHHHHC---CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HHhHHHHHHHHHHHHHccccccCHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 152 TSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 152 ~~~~~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
++.+++++++.++.+++++.++++.|.+||++|+++....+......+++.|+++|+++|++|+++++..+++
T Consensus 166 ~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPivw~l~~~~~g~~i~~~~~i~~~vlDv~aK~~fg~~ll~~~~~ 238 (258)
T 4HYJ_A 166 TKAAENKPAPIRDALLKMRLFILIGWAIYPIGYAVTLFAPGVEIQLVRELIYNFADLTNKVGFGLIAFFAVKT 238 (258)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 20
>4KNF_D Blue-light absorbing proteorhodopsin; Membrane, Proton transport, ion transport; HET: RET; 2.6A {gamma proteobacterium 'Hot 75m4'} SCOP: l.1.1.1, f.13.1.0; Related PDB entries: 2L6X_A 4KNF_A 4KNF_B 4KNF_C 4KNF_E 4KLY_A 4KLY_B 4KLY_E 4KLY_C 4KLY_D
Probab=100.00 E-value=4.4e-38 Score=263.83 Aligned_cols=214 Identities=27% Similarity=0.383 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 80 (226)
..+...++|+++++|.+++++|+..+++++ +++|..++++++++.+++++|+.|+.++.. ++++..+.||+|
T Consensus 27 ~~~~~~~lw~~~~~~~~~~~~f~~~~~~~~-~~~R~~~~l~~~i~~ia~~aY~~ma~~~~~-------~g~~~~~~RYvd 98 (261)
T 4KNF_D 27 SDTVGVSFWLVTAGMLAATVFFFVERDQVS-AKWKTSLTVSGLITGIAFWHYLYMRGVWID-------TGDTPTVFRYIN 98 (261)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHGGGSC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HCCCCHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHHHhcccc-------CCCCCcHHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHh-HHHHH
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDAD----QGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFG-FTSKA 155 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~----~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~-~~~~~ 155 (226)
|++|||++++++++++|.+ ++.....++.|.+|+.+|++|+...+ .||.++.+|+++|+.++|.++.+ .++.+
T Consensus 99 W~lTtPlll~~l~llag~~~~~~~~~~~~lv~~~~~Mi~~G~~g~~~~~--~~w~~f~~g~~~f~~il~~l~~~~~~~~~ 176 (261)
T 4KNF_D 99 WLLTVPLLVVEFYLILAACTSVAASLFKKLLAGSLVMLGAGFAGEAGLA--PVLPAFIIGMAGWLYMIYELYMGEGKAAV 176 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHHHHSTTSCCC-
T ss_pred HHhHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 156 ESMRPEVASTFKVLRNVTVVLWSAYPVVWLIG-SEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 156 ~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~-~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
++++++.++.++.++.+++++|.+||++|+++ .||.+.++++.|++.|+++|+++|++|+++++..+++
T Consensus 177 ~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~eg~~~i~~~~e~i~y~ilDv~~K~~fg~~l~~~~~~ 246 (261)
T 4KNF_D 177 STASPAVNSAYNAMMMIIVVGWAIYPAGYAAGYLMGGEGVYASNLNLIYNLADFVNKILFGLIIWNVAVK 246 (261)
T ss_dssp --CCSSHHHHHHHHHHCCCCCTTHHHHHHHHHHCCCC--CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 21
>5AZD_C Thermophilic rhodopsin; Membrane protein, Retinal, Ion pump; HET: LYR; 2.8A {Thermus thermophilus JL-18}; Related PDB entries: 5AZD_D 5AZD_B 5AZD_A
Probab=100.00 E-value=6.6e-38 Score=263.77 Aligned_cols=216 Identities=27% Similarity=0.402 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHH-hCCCceeeccC----CCCCcchHHHHHHHH
Q 4Y9H:A|PDBID|C 8 LALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSML-LGYGLTMVPFG----GEQNPIYWARYADWL 82 (226)
Q Consensus 8 ~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma-~~~g~~~~~~~----~~~~~v~~~RYv~W~ 82 (226)
+++++++|++++++|+..+++.+ +++|..++++++++.+++++|+.|+ .+.|....+.+ ++.+++++.||+||+
T Consensus 19 ~~~~~~~~~~~~~~f~~~~~~~~-~~~r~~~~l~~~i~~va~~~Y~~ma~~~~g~~~~~~g~~~~~g~~~~~~~RYv~W~ 97 (268)
T 5AZD_C 19 LSLTIAGMLAAFVFFLLARSYVA-PRYHIALYLSALIVFIAGYHYLRIFESWVGAYQLQDGVYVPTGKPFNDFYRYADWL 97 (268)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEETTEEEECSCCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHHHHHHHHHHHHHHhcccceeccCCcccCCCceeccHHHHHHHH
Q ss_pred HHHHHHHHHHHHHcCCC----HHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh-
Q 4Y9H:A|PDBID|C 83 FTTPLLLLDLALLVDAD----QGTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAES- 157 (226)
Q Consensus 83 ittPlll~~l~~l~~~~----~~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~- 157 (226)
+|||++++++++++|.+ ++.+...++.|.+|+.+|++|++..++..||.|+.+|+++|+.+++.++.+.++.+++
T Consensus 98 ~TtPlll~~l~ll~g~~~~~~~~~~~~~i~~~~~mi~~G~~g~~~~~~~~~~~w~~is~~~f~~vl~~l~~~~~~~~~~~ 177 (268)
T 5AZD_C 98 LTVPLLLLELILVLGLTAARTWNLSIKLVVASVLMLALGYVGEVNTEPGPRTLWGALSSIPFFYILYVLWVELGQAIREA 177 (268)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccchhccHHHHHHHHHHHHHHHHhHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-CCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 158 -MRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEG-AGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 158 -~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g-~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
++++.++.++.++.+++++|.+||++|+++.++ .+.++++.|++.|+++|+++|++|+++++..+++
T Consensus 178 ~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~~~~g~i~~~~~~i~y~vlDv~~K~~f~~~l~~~~~~ 246 (268)
T 5AZD_C 178 KFGPRVLELLGATRLVLLMSWGFYPIAYALGTWLPGGAAQEVAIQIGYSLADLIAXPIYGLLVFAIARA 246 (268)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHh
No 22
>3DDL_A Xanthorhodopsin; rhodopsin, carotenoid, ion pump, light-harvesting; HET: PX4, SXN, PCW, RET, UNL; 1.9A {Salinibacter ruber} SCOP: f.13.1.0; Related PDB entries: 3DDL_B
Probab=100.00 E-value=7e-38 Score=264.24 Aligned_cols=217 Identities=22% Similarity=0.378 Sum_probs=0.0 Template_Neff=7.800
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCC---CCCcchH--HHHHHH
Q 4Y9H:A|PDBID|C 7 WLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGG---EQNPIYW--ARYADW 81 (226)
Q Consensus 7 ~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~---~~~~v~~--~RYv~W 81 (226)
|+|+++++|.+++++++..++|++ +++|..++++.+++.+++++|+.|++|++......++ +.+++++ .||+||
T Consensus 19 ~~w~~~~~m~~~~l~f~~~~~~~~-~~~R~~~~l~~~i~~va~~~Y~~m~~~~~~~~~~~~g~~~~~~~~~~~~~RYvdW 97 (273)
T 3DDL_A 19 MFSFTVATMTASFVFFVLARNNVA-PKYRISMMVSALVVFIAGYHYFRITSSWEAAYALQNGMYQPTGELFNDAYRYVDW 97 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGSC-GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTEEECSSSEEECSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHHHHhchHhHHHhhCCCCCCCCcccchHHHHHHH
Q ss_pred HHHHHHHHHHHHHHcCCCHHH----HHHHHHHHHHHHHHHHHHHHcccc---hHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 4Y9H:A|PDBID|C 82 LFTTPLLLLDLALLVDADQGT----ILALVGADGIMIGTGLVGALTKVY---SYRFVWWAISTAAMLYILYVLFFGFTSK 154 (226)
Q Consensus 82 ~ittPlll~~l~~l~~~~~~~----~~~~v~~~~~mi~~g~~g~~~~~~---~~~~~~~~~s~~~~~~i~~~l~~~~~~~ 154 (226)
++|||++++++++++|.+.+. +...++.+++|+.+|++|+...++ +.||.|+.+|+++|+.+++.++.+.+++
T Consensus 98 ~iTtPlll~~l~llag~~~~~~~~~~~~~v~~~~~mi~~g~~~~~~~~~~~~~~~~~w~~is~~~~~~il~~l~~~~~~~ 177 (273)
T 3DDL_A 98 LLTVPLLTVELVLVMGLPKNERGPLAAKLGFLAALMIVLGYPGEVSENAALFGTRGLWGFLSTIPFVWILYILFTQLGDT 177 (273)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCCTTSHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHhchHHHhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccC---CCCCCCh---hHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 155 AESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSE---GAGIVPL---NIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~---g~~~i~~---~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
+++++++.++.++.++.+++++|.+||++|+++.. +.+++++ +.|++.|+++|+++|++|+++++..+++
T Consensus 178 a~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~~~~~~~~~~~~~~~~e~i~y~ilDv~~K~~fg~~ll~~~~~ 253 (273)
T 3DDL_A 178 IQRQSSRVSTLLGNARLLLLATWGFYPIAYMIPMAFPEAFPSNTPGTIVALQVGYTIADVLAKAGYGVLIYNIAKA 253 (273)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------CTTCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 23
>3UG9_A Archaeal-type opsin 1, Archaeal-type opsin; microbialrhodopsin, seven-transmembrane, light-gated cation channel; HET: OLA, RET; 2.3A {Chlamydomonas reinhardtii}; Related PDB entries: 6CSO_A 6EIG_A 6EIG_B 6EID_B 6EID_A 4YZI_A 6CSN_A
Probab=100.00 E-value=6.1e-37 Score=263.90 Aligned_cols=213 Identities=20% Similarity=0.322 Sum_probs=0.0 Template_Neff=6.600
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHH-HHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHHHH
Q 4Y9H:A|PDBID|C 5 WIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTL-VPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLF 83 (226)
Q Consensus 5 ~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~-i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W~i 83 (226)
..|+|+++++|+++++++....+|.+ +++|..+.+++. ++.+ ++|+.|+++.+....+ ++|++++.||+||++
T Consensus 69 ~~~~W~~f~v~~l~~l~f~~~~~r~~-~~~r~~y~~~~~~i~~i--iaY~~ma~~~g~~~~~---~gr~v~~~RYvdWll 142 (333)
T 3UG9_A 69 NILQWITFALSALCLMFYGYQTWKST-CGWEEIYVATIEMIKFI--IEYFHEFDEPAVIYSS---NGNKTVWLRYAEWLL 142 (333)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHHHH--HHHHHTTSTTTSEECT---TSCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHH--HHHHHHhcCCceeecC---CCceeeHHHHHHHHh
Q ss_pred HHHHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCC-
Q 4Y9H:A|PDBID|C 84 TTPLLLLDLALLVDADQG---TILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSKAESMR- 159 (226)
Q Consensus 84 ttPlll~~l~~l~~~~~~---~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~- 159 (226)
|+|++++.+++++|.++. .+...++.+++|+.+|++|++..+ ..||.|+++|++.+++.++...+..++.+++++
T Consensus 143 TtPLlL~~L~llag~~~~~~~~i~~li~~d~~MIvtGl~gal~~~-~~kw~~f~ig~~~~l~~~~~~~~~~~~~a~~~~~ 221 (333)
T 3UG9_A 143 TCPVILIHLSNLTGLANDYNKRTMGLLVSDIGTIVWGTTAALSKG-YVRVIFFLMGLCYGIYTFFNAAKVYIEAYHTVPK 221 (333)
T ss_dssp HHHHHHHHHTTTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 160 PEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 160 ~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
++.++.++.++.+++++|.+||++|++++||.|.++++.++++|+++|+++|++|+++++..+..
T Consensus 222 ~~~~~~~~~L~~~~~v~W~~YPIvwlL~~eG~~~is~~~e~i~y~ilDilaK~~fg~ll~~~r~~ 286 (333)
T 3UG9_A 222 GRCRQVVTGMAWLFFVSWGMFPILFILGPEGFGVLSVYGSTVGHTIIDLMSKNCWGLLGHYLRVL 286 (333)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCSSCHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 24
>5JSI_A Nitrate/nitrite sensor protein NarQ (E.C.2.7.13.3); membrane protein, iodide, UNKNOWN FUNCTION; HET: LYR, OLC, LFA, IOD; 2.0A {Candidatus Actinomarina minuta}; Related PDB entries: 5JSI_B
Probab=100.00 E-value=1e-36 Score=249.63 Aligned_cols=203 Identities=23% Similarity=0.407 Sum_probs=0.0 Template_Neff=8.300
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHHHHHHH
Q 4Y9H:A|PDBID|C 6 IWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYADWLFTT 85 (226)
Q Consensus 6 ~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~W~itt 85 (226)
.++|+++++|.++++.|+.++++.+ +++|..+++++.++.+++++|+.|+.+++ +++++++.||+||++||
T Consensus 7 ~~~w~~~~~~~~~~~~f~~~~~~~~-~~~R~~~~l~~~i~~ia~~~Y~~m~~~~~--------~g~~~~~~RYv~W~~Tt 77 (220)
T 5JSI_A 7 RLFMVATVGMLAGTVFLLASSREVK-PEHRRGVYISALVCGIAWYHYQKMGASWE--------SGSYDTGLRYVDWVLTV 77 (220)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSC-GGGCHHHHHHHHHHHHHHHHHHHHHHHHH--------HSSCCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------cCCCCcHHHHhHHHhHH
Q ss_pred HHHHHHHHHHcCCCHH---HHHHHHHHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHH
Q 4Y9H:A|PDBID|C 86 PLLLLDLALLVDADQG---TILALVGADGIMIGTGLVGALTKV-YSYRFVWWAISTAAMLYILYVLFFGFTSKAESMRPE 161 (226)
Q Consensus 86 Plll~~l~~l~~~~~~---~~~~~v~~~~~mi~~g~~g~~~~~-~~~~~~~~~~s~~~~~~i~~~l~~~~~~~~~~~~~~ 161 (226)
|+++++++.++|.++. .+...++.|.+|+.+|++|+..++ ++.||.++.+|+++|+.+++.+.+ ..++++++
T Consensus 78 Plll~~l~~l~g~~~~~~~~~~~~~~~~~~mi~~g~~g~~~~~~~~~~w~~~~~s~~~~~~ll~~l~~----~~~~~~~~ 153 (220)
T 5JSI_A 78 PLMFVEVLAVTRKGAAYNEAVRNWGIAATVMIGAGYYGETSAAGSNEYWTGFVIAMATYVWLMRNLQA----EGEGLKGD 153 (220)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHHHHHHHHHHHHHHHH----TTTTCCHH
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHH----hhccCCHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 162 VASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 162 ~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
.++.+++++.++.+.|.+||++|+++.+| .++ +.|++.|+++|+++|++|+++++..+++
T Consensus 154 ~~~~~~~l~~~~~~~W~~YPivw~l~~~g--~~~-~~~~~~~~~~Di~~K~~f~~~ll~~~~~ 213 (220)
T 5JSI_A 154 QAVAFENIKNLILVGWIIYPLGYIAPVVG--DFD-AIREVLYTIADIINXVGLGVLVLQMARV 213 (220)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHS--CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcC--ChH-HHHHHHHHHHHHHhHHHHHHHHHHHHHH
No 25
>6CSM_D GtACR1; rhodopsin, channelrhodopsin, anion channel, optogenetics; HET: RET, OLA; 2.9A {Guillardia theta CCMP2712}; Related PDB entries: 6CSM_B 6CSM_A 6CSM_C
Probab=100.00 E-value=2.7e-36 Score=255.00 Aligned_cols=212 Identities=21% Similarity=0.325 Sum_probs=0.0 Template_Neff=7.700
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYAD 80 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv~ 80 (226)
.|++|.|+ +..|.++++.++..+|+.+ .++++++++.+++++|+.|++|.+....+ ++|++++.||+|
T Consensus 27 ~g~~~~w~---v~~~~~~~~~~~~~sr~~~------~~~l~~~i~~va~~~Y~~ma~g~g~~~~~---~~r~v~~~RYv~ 94 (277)
T 6CSM_D 27 DGIKYVQL---VMAVVSACQVFFMVTRAPK------VPWEAIYLPTTEMITYSLAFTGNGYIRVA---NGKYLPWARMAS 94 (277)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHTCSS------CCTHHHHHHHHHHHHHHHHHTTCCEEEBT---TSCEEEHHHHHH
T ss_pred HHHHHHHH---HHHHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHHHHHHHhCCCceecC---CCccchHHHHHH
Q ss_pred HHHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHh-------
Q 4Y9H:A|PDBID|C 81 WLFTTPLLLLDLALLVDADQ---GTILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFG------- 150 (226)
Q Consensus 81 W~ittPlll~~l~~l~~~~~---~~~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~------- 150 (226)
|++|+|++++.+++++|.++ ......++.|.+|+++|++|+...++..||.++.+|+++|+.+++.++..
T Consensus 95 W~vTtPlll~~l~llag~~~~~~~~~~~~i~~~~~mi~~G~~g~~~~~~~~kw~~~~is~~~fl~v~~~l~~~~~~~~~~ 174 (277)
T 6CSM_D 95 WLCTCPIMLGLVSNMALVKYKSIPLNPMMIAASSICTVFGITASVVLDPLHVWLYCFISSIFFIFEMVVAFAIFAITIHD 174 (277)
T ss_dssp HHHHHHHHHHHHHTTCCCEETTEECHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCcccCChHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 151 FTSKAESMRPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
.++.+++++++.++.++.++.+++++|.+||++|+++++|.|++|++.|++.|+++|+++|++|+++++..+.+
T Consensus 175 ~~~~a~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~G~~~is~~~e~i~y~ilDil~K~~f~~~ll~~~~~ 248 (277)
T 6CSM_D 175 FQTIGSPMSLKVVERLKLMRIVFYVSWMAYPILWSFSSTGACIMSENTSSVLYLLGDALCKNTYGILLWATTWG 248 (277)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHSTTTTCCSCHHHHHHHHHHHHCCCCCCHHHHHHCCCCC
T ss_pred HHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 26
>6EYU_B Bacteriorhodopsin; Retinal protein, proton transport, MEMBRANE; HET: RET, LFA, MUN; 2.5A {Nanosalina sp. (strain J07AB43)}; Related PDB entries: 6EYU_C 6EYU_A
Probab=100.00 E-value=5.8e-36 Score=247.02 Aligned_cols=207 Identities=24% Similarity=0.317 Sum_probs=0.0 Template_Neff=7.900
Q ss_pred CCcHHHHHHHHHHH-HHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeeccCCCCCcchHHHHH
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTAL-MGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPFGGEQNPIYWARYA 79 (226)
Q Consensus 1 ~~~~~~~~~~~~~~-m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~~~~~~~v~~~RYv 79 (226)
+.....++|.++++ |.+++++|+.+++|+ +++|+.++++.+++.+++++|+.|+.+ +.+.++.||+
T Consensus 9 ~~~g~~~lw~~~~i~~~~~~~~f~~~~~~~--~~~r~~~~l~~~i~~ia~~~Y~~m~~~-----------g~~~~~~RYi 75 (232)
T 6EYU_B 9 GGFGSQPFILAYIITAMISGLLFLYLPRKL--DVPQKFGIIHFFIVVWSGLMYTNFLNQ-----------SFLSDYAWYM 75 (232)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHHHHHTTTTSC-----------CTTGGGHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHcc-----------ccchhHHHHH
Q ss_pred HHHHHHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 4Y9H:A|PDBID|C 80 DWLFTTPLLLLDLALLVDADQGT-----ILALVGADGIMIGTGLVGALTKVYSYRFVWWAISTAAMLYILYVLFFGFTSK 154 (226)
Q Consensus 80 ~W~ittPlll~~l~~l~~~~~~~-----~~~~v~~~~~mi~~g~~g~~~~~~~~~~~~~~~s~~~~~~i~~~l~~~~~~~ 154 (226)
||++|||+++++++.+++.+++. ....++.|..|+.+|+.|+...+ +.++.+|+++|+.++|.++++.++.
T Consensus 76 ~W~~TtPlll~~l~~l~~~~~~~~~~~~~~~l~~~~~~mi~~G~~~~~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~ 151 (232)
T 6EYU_B 76 DWMVSTPLILLALGLTAFHGADTKRYDLLGALLGAEFTLVITGLLAQAQGS----ITPYYVGVLLLLGVVYLLAKPFREI 151 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTC----SHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHHHHHHHHHHHHHchHHHH
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 4Y9H:A|PDBID|C 155 AESMRPEVASTFKVLRNVTVVLWSAYPVVWLIG-----SEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAI 224 (226)
Q Consensus 155 ~~~~~~~~~~~~~~l~~~~~i~W~~YPi~w~l~-----~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~ 224 (226)
+++++++.++.++.++.++.++|.+||++|+++ +||.|.+|++.|++.|+++|+++|++|+++++..+++
T Consensus 152 a~~~~~~~~~~~~~l~~~~~v~W~~YPi~w~l~~~~~~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~ll~~~~~ 226 (232)
T 6EYU_B 152 AEESSDGLARAYKILAGYIGIFFLSYPTVWYISGIDALPGSLNILDPTQTSIALVVLPFFCKQVYGFLDMYLIHK 226 (232)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBCCSSSCSSCCCBCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCcccCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
No 27
>1BCT_A BACTERIORHODOPSIN (FRAGMENT 163-231) (NMR, 14; PHOTORECEPTOR; NMR {Halobacterium salinarum} SCOP: j.35.1.1
Probab=99.28 E-value=1.4e-15 Score=102.00 Aligned_cols=68 Identities=100% Similarity=1.503 Sum_probs=0.0 Template_Neff=7.200
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhC
Q 4Y9H:A|PDBID|C 159 RPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 226 (226)
Q Consensus 159 ~~~~~~~~~~l~~~~~i~W~~YPi~w~l~~~g~~~i~~~~~~~~~~ilDi~~K~~f~~~l~~~~~~~~ 226 (226)
+++.++.++.++.++.++|.+||++|.+++||.+.++++.|++.|+++|+++|++|+++++..++.+|
T Consensus 2 ~~~~~~~~~~l~~~~~v~W~~YPi~w~lg~~g~~~i~~~~~~i~y~ilDv~~K~~fg~~~l~~~~~~~ 69 (69)
T 1BCT_A 2 RPEVASTFKVLRNVTVVLWSAYPVVWLIGSEGAGIVPLNIETLLFMVLDVSAKVGFGLILLRSRAIFG 69 (69)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 28
>1BHA_A BACTERIORHODOPSIN (PROTEOLYTIC FRAGMENT 1 -; PHOTORECEPTOR; NMR {Halobacterium salinarum} SCOP: j.35.1.1; Related PDB entries: 1BHB_A
Probab=98.44 E-value=2e-10 Score=77.33 Aligned_cols=65 Identities=97% Similarity=1.598 Sum_probs=0.0 Template_Neff=7.100
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHhCCCceeecc
Q 4Y9H:A|PDBID|C 1 GRPEWIWLALGTALMGLGTLYFLVKGMG-VSDPDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPF 66 (226)
Q Consensus 1 ~~~~~~~~~~~~~~m~~~~~~f~~~~~~-~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~g~~~~~~ 66 (226)
..+...|+|+++++|.++++++..+.++ ++ +++|++|+++.+|+.+++++|+.|++|.|.+.+++
T Consensus 6 ~~~~~~~lw~~~~~m~~~~~~f~~~s~~~~~-~~~R~~~~~~~~i~~iaaiaY~~MA~g~G~~~v~~ 71 (71)
T 1BHA_A 6 GRPEWIWLALGTALMGLGTLYFLVKGMGVSD-PDAKKFYAITTLVPAIAFTMYLSMLLGYGLTMVPF 71 (71)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHSHHHHHHHHHHHHHTCSSSSCC--
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCC
No 29
>5ABB_Z PROTEIN TRANSLOCASE SUBUNIT SECY, PROTEIN; TRANSLATION, RIBOSOME, MEMBRANE PROTEIN, TRANSLOCON; 8.0A {ESCHERICHIA COLI}
Probab=96.55 E-value=3.3e-05 Score=51.24 Aligned_cols=51 Identities=31% Similarity=0.326 Sum_probs=0.0 Template_Neff=4.800
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHhCC
Q 4Y9H:A|PDBID|C 8 LALGTALMGLGTLYFLVKGMGVSDPDAKKFYAITTLVPAIAFTMYLSMLLGY 59 (226)
Q Consensus 8 ~~~~~~~m~~~~~~f~~~~~~~~~~~~r~~~~l~~~i~~ia~~~Y~~ma~~~ 59 (226)
++++.+.|.+++++|+..+.+.+ +++|....++++++.|++.+|+-|...+
T Consensus 15 fs~g~aaM~AatvfF~l~~~~V~-~~yr~s~~lsalVt~iA~~hY~~m~~~W 65 (69)
T 5ABB_Z 15 FWLVTAALLASTVFFFVERDRVS-AKWKTSLTVSGLVTGIAFWHYMYMRGVW 65 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCC-SCCCCSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccC-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
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