1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
|
hmmpfam - search one or more sequences against HMM database
HMMER 2.4i (December 2006)
Copyright (C) 1992-2006 HHMI Janelia Farm
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/bow/db/hmmer/Pfam_fs
Sequence file: mult.fasta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query sequence: random_s00
Accession: [none]
Description: [none]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
[no hits above thresholds]
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
[no hits above thresholds]
Alignments of top-scoring domains:
[no hits above thresholds]
//
Query sequence: gi|4885477|ref|NP_005359.1|
Accession: [none]
Description: myoglobin [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Globin Globin 129.8 5.8e-37 1
tRNA-synt_1b tRNA synthetases class I (W and Y) 1.8 2.2 1
Rotavirus_VP3 Rotavirus VP3 protein -1.2 7.9 1
DTHCT DTHCT (NUC029) region 1.5 9.8 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Globin 1/1 7 143 .. 1 148 [] 129.8 5.8e-37
DTHCT 1/1 101 106 .. 101 106 .] 1.5 9.8
tRNA-synt_1b 1/1 120 137 .. 320 337 .] 1.8 2.2
Rotavirus_VP3 1/1 134 147 .. 1 15 [. -1.2 7.9
Alignments of top-scoring domains:
Globin: domain 1 of 1, from 7 to 143: score 129.8, E = 5.8e-37
*->dkalvkasWgkvkgtdnreelGaealarlFkayPdtktyFpkfgdls
+++lv+ Wgkv++ +++ +G+e+l rlFk +P+t ++F kf+ l+
gi|4885477 7 EWQLVLNVWGKVEA--DIPGHGQEVLIRLFKGHPETLEKFDKFKHLK 51
sadaikgspkfkaHgkkVlaalgeavkhLgnddddgnlkaalkkLaarHa
s d++k s+++k+Hg++Vl alg ++k +g + a +k La +Ha
gi|4885477 52 SEDEMKASEDLKKHGATVLTALGGILKK------KGHHEAEIKPLAQSHA 95
erghvdpanFkllgeallIvvLaahlggeveftpevkaAWdkaldvvada
++++++ ++ + ++e+++ +vL+++ +g +f +++++A++kal + +
gi|4885477 96 TKHKIPVKYLEFISECII-QVLQSKHPG--DFGADAQGAMNKALELFRKD 142
l<-*
+
gi|4885477 143 M 143
DTHCT: domain 1 of 1, from 101 to 106: score 1.5, E = 9.8
*->pvKYLe<-*
pvKYLe
gi|4885477 101 PVKYLE 106
tRNA-synt_1b: domain 1 of 1, from 120 to 137: score 1.8, E = 2.2
*->hggelKkaaaeavnalls<-*
h+g++ +a+ a+n++l+
gi|4885477 120 HPGDFGADAQGAMNKALE 137
Rotavirus_VP3: domain 1 of 1, from 134 to 147: score -1.2, E = 7.9
*->MkVLaLFrrgvalnY<-*
k L LFr+++a+nY
gi|4885477 134 -KALELFRKDMASNY 147
//
Query sequence: gi|126362951:116-221
Accession: [none]
Description: leukocyte immunoglobulin-like receptor subfamily B member 1 isoform 2 precursor [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Pro-NT_NN Neurotensin/neuromedin N precursor 1.9 1.9 1
ig Immunoglobulin domain 4.1 2.3 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
Pro-NT_NN 1/1 22 48 .. 1 28 [. 1.9 1.9
ig 1/1 23 84 .. 1 65 [] 4.1 2.3
Alignments of top-scoring domains:
Pro-NT_NN: domain 1 of 1, from 22 to 48: score 1.9, E = 1.9
*->maGmnlqLvCliLLAFssWsLCsDsEEd<-*
G n+ L C +AF +sLC + E++
gi|1263629 22 -SGGNVILQCDSQVAFDGFSLCKEGEDE 48
ig: domain 1 of 1, from 23 to 84: score 4.1, E = 2.3
*->GesvtLtCsvsgfgppdvtvtWlrngk.lt.gvlvtssenngdstyq
G+ v L+C + ++++++g + ++ l + + +g+s +
gi|1263629 23 GGNVILQCDS---QVAFDGFSLCKEGEdEHpQCLNSQPHARGSSRAI 66
tsLtitnvtpeDggtYtCvv<-*
+++ +v+p+ Y+C++
gi|1263629 67 --FSVGPVSPSRRWWYRCYA 84
//
Query sequence: gi|22748937|ref|NP_065801.1|
Accession: [none]
Description: exportin-5 [Homo sapiens]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Xpo1 Exportin 1-like protein 170.1 5.1e-48 1
Ssl1 Ssl1-like 8.7 0.00012 1
IBN_N Importin-beta N-terminal domain 9.7 0.053 1
XH XH domain 4.8 0.56 1
Ni_hydr_CYTB Cytochrome b561 family 4.5 1.1 1
Mic1 Colon cancer-associated protein Mic1- 3.3 1.7 1
DNA_ligase_aden NAD-dependent DNA ligase adenylation 1.6 1.7 1
FGGY_N FGGY family of carbohydrate kinases, 2.2 1.9 1
DUF1098 Protein of unknown function (DUF1098) 3.3 2 1
Pox_L5 Poxvirus L5 protein family 3.8 2 1
Phage_holin_4 Holin family 3.0 2.3 1
PTR2 POT family 1.1 3 1
EAV_GS Equine arteritis virus small envelope 0.4 3.5 1
VIRB2 VIRB2 type IV secretion protein 1.6 3.5 1
SapB_1 Saposin-like type B, region 1 3.2 3.7 1
DUF1177 Protein of unknown function (DUF1177) 0.3 3.7 1
Trehalase Trehalase 0.4 3.8 1
DUF1019 Protein of unknown function (DUF1019) 1.4 3.9 1
Peptidase_S13 D-Ala-D-Ala carboxypeptidase 3 (S13) 0.5 4 1
LCM Leucine carboxyl methyltransferase -0.4 5.1 1
RRN3 RNA polymerase I specific transcripti -0.7 5.5 1
dNK Deoxynucleoside kinase 1.1 6.1 1
Transposase_5 Transposase 2.1 6.3 1
ATP-grasp ATP-grasp domain 0.1 6.7 1
Lys C-type lysozyme/alpha-lactalbumin fam 1.2 7.1 1
Plant_TF Plant transcription factor 0.9 7.2 1
Hydantoinase_B Hydantoinase B/oxoprolinase -1.4 7.6 1
DUF1116 Protein of unknown function (DUF1116) -1.1 7.8 1
Herpes_teg_N Herpesvirus tegument protein, N-termi 0.1 8.7 1
KE2 KE2 family protein 1.6 9.1 1
RVP_2 Retroviral aspartyl protease 0.1 9.1 1
Rad50_zn_hook Rad50 zinc hook motif 2.2 9.2 2
V-ATPase_H V-ATPase subunit H -1.3 9.6 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
DUF1116 1/1 6 15 .. 405 414 .] -1.1 7.8
SapB_1 1/1 9 27 .. 6 24 .. 3.2 3.7
Rad50_zn_hook 1/2 21 47 .. 1 28 [. 0.8 22
IBN_N 1/1 33 100 .. 1 85 [] 9.7 0.053
dNK 1/1 103 120 .. 153 170 .] 1.1 6.1
Xpo1 1/1 109 271 .. 1 178 [] 170.1 5.1e-48
Peptidase_S13 1/1 186 195 .. 390 399 .] 0.5 4
DUF1098 1/1 193 213 .. 32 54 .. 3.3 2
KE2 1/1 198 213 .. 1 16 [. 1.6 9.1
RRN3 1/1 198 211 .. 656 669 .] -0.7 5.5
LCM 1/1 297 305 .. 322 330 .] -0.4 5.1
FGGY_N 1/1 325 338 .. 249 262 .] 2.2 1.9
Ni_hydr_CYTB 1/1 376 396 .. 197 218 .] 4.5 1.1
Ssl1 1/1 404 411 .. 257 264 .] 8.7 0.00012
DUF1177 1/1 445 465 .. 292 312 .] 0.3 3.7
V-ATPase_H 1/1 491 517 .. 144 170 .. -1.3 9.6
PTR2 1/1 497 513 .. 414 430 .] 1.1 3
Mic1 1/1 502 528 .. 1 27 [. 3.3 1.7
Hydantoinase_B 1/1 512 532 .. 308 328 .. -1.4 7.6
Transposase_5 1/1 605 617 .. 1 13 [. 2.1 6.3
Lys 1/1 641 652 .. 1 12 [. 1.2 7.1
XH 1/1 645 666 .. 133 156 .] 4.8 0.56
Trehalase 1/1 660 673 .. 1 14 [. 0.4 3.8
ATP-grasp 1/1 661 677 .. 1 18 [. 0.1 6.7
DNA_ligase_aden 1/1 767 787 .. 1 21 [. 1.6 1.7
Phage_holin_4 1/1 789 810 .. 124 146 .] 3.0 2.3
Rad50_zn_hook 2/2 790 811 .. 1 22 [. 1.3 16
RVP_2 1/1 873 894 .. 46 67 .. 0.1 9.1
VIRB2 1/1 956 991 .. 1 32 [. 1.6 3.5
DUF1019 1/1 1019 1028 .. 1 12 [. 1.4 3.9
Plant_TF 1/1 1027 1034 .. 132 139 .] 0.9 7.2
EAV_GS 1/1 1049 1071 .. 1 27 [. 0.4 3.5
Pox_L5 1/1 1110 1134 .. 1 26 [. 3.8 2
Herpes_teg_N 1/1 1125 1133 .. 1 10 [. 0.1 8.7
Alignments of top-scoring domains:
DUF1116: domain 1 of 1, from 6 to 15: score -1.1, E = 7.8
*->leALAErvgv<-*
+ AL+E+ ++
gi|2274893 6 VNALCEQLVK 15
SapB_1: domain 1 of 1, from 9 to 27: score 3.2, E = 3.7
*->lCemvVkevenlLkdnkTq<-*
lCe++Vk v + n Tq
gi|2274893 9 LCEQLVKAVTVMMDPNSTQ 27
Rad50_zn_hook: domain 1 of 2, from 21 to 47: score 0.8, E = 22
*->galesekaelkkaieeleeeesscCPvC<-*
+ +s+ +++++a++ +ee + +CP+C
gi|2274893 21 MDPNSTQRYRLEALKFCEEFKE-KCPIC 47
IBN_N: domain 1 of 1, from 33 to 100: score 9.7, E = 0.053
*->AEkqLeqlekqklPgFllaLlqIlansdtssdlqvRqlAalyLKNlI
A k +e++++ k P ++++ l+++ +t+ vR++++++L++ +
gi|2274893 33 ALKFCEEFKE-KCPICVPCGLRLA--EKTQ-VAIVRHFGLQILEHVV 75
trhWnshrkqggyeqrwlslpeeekeqIknnllnllgs<-*
+ +Wn ++ ek ++kn++ +l++
gi|2274893 76 KFRWN-------------GMSRLEKVYLKNSVMELIAN 100
dNK: domain 1 of 1, from 103 to 120: score 1.1, E = 6.1
*->lDfvedeediknkreeil<-*
l++ e+e++ik+++ +i+
gi|2274893 103 LNILEEENHIKDALSRIV 120
Xpo1: domain 1 of 1, from 109 to 271: score 170.1, E = 5.1e-48
*->pkflrnKLalalaelakqewPsnWpsffpdlvsllsssssqkspnps
+++++ L+++++e++k+ewP++Wp+ + +l l++++ ++
gi|2274893 109 ENHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQG-------ET 148
vcellLriLkvLpEEvfdqdfsrtrltqdrfnnrlkdllrsqDcmpqile
++el++ iL++L E+v+ f ++l +r +++++++l+++ m++i++
gi|2274893 149 QTELVMFILLRLAEDVVT--F--QTLPPQR-RRDIQQTLTQN--MERIFS 191
lllqiLessrsthss.e.t.q.e.kAkqssellsatLkclgswlslgWip
+ll+ L+ +++++++ ++++++e+kA++++++ +a+L++l+++++ W++
gi|2274893 192 FLLNTLQENVNKYQQvKtDtSqEsKAQANCRVGVAALNTLAGYID--WVS 239
iglianvnpi.llnllfslLsgpesdpdlreaAveCL<-*
+++i + ++++ll++l+ lL + +l++ A+eCL
gi|2274893 240 MSHITA-ENCkLLEILCLLL----NEQELQLGAAECL 271
Peptidase_S13: domain 1 of 1, from 186 to 195: score 0.5, E = 4
*->rklaFsfisN<-*
++++Fsf++N
gi|2274893 186 MERIFSFLLN 195
DUF1098: domain 1 of 1, from 193 to 213: score 3.3, E = 2
*->llnsLNalLsdTvAslIlnDtSe<-*
lln+L+++ ++ ++++++DtS+
gi|2274893 193 LLNTLQEN--VNKYQQVKTDTSQ 213
KE2: domain 1 of 1, from 198 to 213: score 1.6, E = 9.1
*->QelinkfqqLqqqlek<-*
Qe++nk+qq + + ++
gi|2274893 198 QENVNKYQQVKTDTSQ 213
RRN3: domain 1 of 1, from 198 to 211: score -0.7, E = 5.5
*->spnyiewSevkgdy<-*
++n +++++vk+d
gi|2274893 198 QENVNKYQQVKTDT 211
LCM: domain 1 of 1, from 297 to 305: score -0.4, E = 5.1
*->HYcLvhAss<-*
HY+L +A++
gi|2274893 297 HYILSAAQT 305
FGGY_N: domain 1 of 1, from 325 to 338: score 2.2, E = 1.9
*->VvgGggDnaaaalG<-*
V +++g++ +a+lG
gi|2274893 325 VLCALGNQLCALLG 338
Ni_hydr_CYTB: domain 1 of 1, from 376 to 396: score 4.5, E = 1.1
*->aAWAlfHhfvrkDnvllrMlpg<-*
+A ++H + ++D++ll+ +p+
gi|2274893 376 GA-LFRHEILSRDPLLLAIIPK 396
Ssl1: domain 1 of 1, from 404 to 411: score 8.7, E = 0.00012
*->sLIkMGFP<-*
+L+kMGFP
gi|2274893 404 NLVKMGFP 411
DUF1177: domain 1 of 1, from 445 to 465: score 0.3, E = 3.7
*->ElkeLeeklGPksnLqklkre<-*
E ++L +l Pk++ q ++ +
gi|2274893 445 EVMRLACRLDPKTSFQMAGEW 465
V-ATPase_H: domain 1 of 1, from 491 to 517: score -1.3, E = 9.6
*->AKLAcfGpelvegsdLtyylnwLkeqL<-*
+++++f+p v + t++l++ ++q+
gi|2274893 491 SLCSVFSPSFVQWEAMTLFLESVITQM 517
PTR2: domain 1 of 1, from 497 to 513: score 1.1, E = 3
*->lpssmkslwtllsaaas<-*
+ps++++++++l++ ++
gi|2274893 497 SPSFVQWEAMTLFLESV 513
Mic1: domain 1 of 1, from 502 to 528: score 3.3, E = 1.7
*->emiapekYviaIlmeYLRSLnkaeiaa<-*
+ +a ++++++++ R Ln++ei +
gi|2274893 502 QWEAMTLFLESVITQMFRTLNREEIPV 528
Hydantoinase_B: domain 1 of 1, from 512 to 532: score -1.4, E = 7.6
*->savlYvlrtlvgpDiPlNdGc<-*
s++ ++rtl + iP+NdG+
gi|2274893 512 SVITQMFRTLNREEIPVNDGI 532
Transposase_5: domain 1 of 1, from 605 to 617: score 2.1, E = 6.3
*->dRrIlrvvredPr<-*
++ I++++r +P+
gi|2274893 605 CSSIIKMCRDYPQ 617
Lys: domain 1 of 1, from 641 to 652: score 1.2, E = 7.1
*->KvftRCeLareL<-*
+++++C+L ++L
gi|2274893 641 TQMEKCALMEAL 652
XH: domain 1 of 1, from 645 to 666: score 4.8, E = 0.56
*->KATLkEvvdfllniRqlkalkRkR<-*
K+ L+E ++ ++n q k+ R++
gi|2274893 645 KCALMEALVLISN--QFKNYERQK 666
Trehalase: domain 1 of 1, from 660 to 673: score 0.4, E = 3.8
*->klfpDsKtFVDmal<-*
k + ++K F+++ +
gi|2274893 660 KNYERQKVFLEELM 673
ATP-grasp: domain 1 of 1, from 661 to 677: score 0.1, E = 6.7
*->DRlvqkellAkelGlptp<-*
+ ++qk +l +el +p++
gi|2274893 661 NYERQKVFL-EELMAPVA 677
DNA_ligase_aden: domain 1 of 1, from 767 to 787: score 1.6, E = 1.7
*->eeaqqeieeLrelirkydyeY<-*
e++ +++++L +lir+++ +Y
gi|2274893 767 EQILKLLDNLLALIRTHNTLY 787
Phage_holin_4: domain 1 of 1, from 789 to 810: score 3.0, E = 2.3
*->PkemlldiletLknktkqlkked<-*
P eml+++ e + ++++ l++e+
gi|2274893 789 P-EMLAKMAEPFTKALDMLDAEK 810
Rad50_zn_hook: domain 2 of 2, from 790 to 811: score 1.3, E = 16
*->galesekaelkkaieeleeees<-*
++l+ + + + ka+++l+ e+s
gi|2274893 790 EMLAKMAEPFTKALDMLDAEKS 811
RVP_2: domain 1 of 1, from 873 to 894: score 0.1, E = 9.1
*->ISqaFVgrHglpleaLrtPllV<-*
+S aFV +++p ++Lr l+V
gi|2274893 873 LSSAFVNLNNIPDYRLRPMLRV 894
VIRB2: domain 1 of 1, from 956 to 991: score 1.6, E = 3.5
*->msknklrriiaivlmalataivls....efsyapaA<-*
m++++l r+ +m l t+ ++s+++ + s+ap+A
gi|2274893 956 MLEEQLVRMLTREVMDLITVCCVSkkgaDHSSAPPA 991
DUF1019: domain 1 of 1, from 1019 to 1028: score 1.4, E = 3.9
*->MKIkhEhIreaL<-*
M khE ++ aL
gi|2274893 1019 M--KHEDVCTAL 1028
Plant_TF: domain 1 of 1, from 1027 to 1034: score 0.9, E = 7.2
*->AVlvsAFn<-*
A l++AFn
gi|2274893 1027 ALLITAFN 1034
EAV_GS: domain 1 of 1, from 1049 to 1071: score 0.4, E = 3.5
*->FsflCylHWLLLLcfFsGsLLPsavAW<-*
s lC W LL + sG LL av W
gi|2274893 1049 -SQLC---WPLLKQVLSGTLLADAVTW 1071
Pox_L5: domain 1 of 1, from 1110 to 1134: score 3.8, E = 2
*->ElnmaFsptkkvpnDPIdqlvartrL<-*
E+++ + + +D++dq+ + + L
gi|2274893 1110 EIRAVMEQIPEIQKDSLDQF-DCKLL 1134
Herpes_teg_N: domain 1 of 1, from 1125 to 1133: score 0.1, E = 8.7
*->StnQadDckf<-*
S +Q+ Dck+
gi|2274893 1125 SLDQF-DCKL 1133
//
Query sequence: gi|125490392|ref|NP_038661.2|
Accession: [none]
Description: POU domain, class 5, transcription factor 1 isoform 1 [Mus musculus]
Scores for sequence family classification (score includes all domains):
Model Description Score E-value N
-------- ----------- ----- ------- ---
Pou Pou domain - N-terminal to homeobox d 171.2 2.4e-48 1
Homeobox Homeobox domain 86.7 6.5e-23 1
HTH_3 Helix-turn-helix 7.5 0.33 1
WSC WSC domain 2.1 1.5 1
ComC COMC family 3.4 2.3 1
CBM_1 Fungal cellulose binding domain 3.3 3.6 1
Peptidase_M29 Thermophilic metalloprotease (M29) -2.1 4.4 1
DUF1690 Protein of Unknown function (DUF1690) 1.1 4.5 1
DUF137 Protein of unknown function DUF137 1.0 4.7 1
DASH_Duo1 DASH complex subunit Duo1 2.3 5.7 1
TFIIB Transcription factor TFIIB repeat 2.6 6.1 1
DUF1392 Protein of unknown function (DUF1392) 0.8 6.7 1
Parsed for domains:
Model Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
WSC 1/1 59 67 .. 80 87 .] 2.1 1.5
CBM_1 1/1 61 73 .. 1 13 [. 3.3 3.6
Pou 1/1 131 205 .. 1 78 [] 171.2 2.4e-48
ComC 1/1 132 145 .. 1 20 [. 3.4 2.3
Peptidase_M29 1/1 132 145 .. 1 14 [. -2.1 4.4
DASH_Duo1 1/1 133 141 .. 1 9 [. 2.3 5.7
DUF1690 1/1 137 147 .. 151 161 .] 1.1 4.5
HTH_3 1/1 146 166 .. 1 25 [. 7.5 0.33
DUF137 1/1 197 213 .. 164 180 .. 1.0 4.7
Homeobox 1/1 224 280 .. 1 57 [] 86.7 6.5e-23
DUF1392 1/1 248 269 .. 127 164 .] 0.8 6.7
TFIIB 1/1 253 268 .. 1 19 [. 2.6 6.1
Alignments of top-scoring domains:
WSC: domain 1 of 1, from 59 to 67: score 2.1, E = 1.5
*->p.pseiCGG<-*
p+++e CGG
gi|1254903 59 PpAYEFCGG 67
CBM_1: domain 1 of 1, from 61 to 73: score 3.3, E = 3.6
*->vygQCGGigysGp<-*
+y+ CGG+ y Gp
gi|1254903 61 AYEFCGGMAYCGP 73
Pou: domain 1 of 1, from 131 to 205: score 171.2, E = 2.4e-48
*->deatdleeLEkFAkeFKqRRIkLGyTQadVGlALgalygPGvnafSQ
d+++ ++eLE+FAk +Kq+RI+LGyTQadVGl+Lg l+g ++fSQ
gi|1254903 131 DMKALQKELEQFAKLLKQKRITLGYTQADVGLTLGVLFG---KVFSQ 174
tTICRFEaLqLSfKNmcKLKPlLekWLeeAE<-*
tTICRFEaLqLS KNmcKL+PlLekW+eeA+
gi|1254903 175 TTICRFEALQLSLKNMCKLRPLLEKWVEEAD 205
ComC: domain 1 of 1, from 132 to 145: score 3.4, E = 2.3
*->MKntvkkkllkkeLeqFkeL<-*
MK ++k eLeqF L
gi|1254903 132 MKALQK------ELEQFAKL 145
Peptidase_M29: domain 1 of 1, from 132 to 145: score -2.1, E = 4.4
*->MdaFkkeLekyAeL<-*
M a +keLe +A L
gi|1254903 132 MKALQKELEQFAKL 145
DASH_Duo1: domain 1 of 1, from 133 to 141: score 2.3, E = 5.7
*->aaLqkELeq<-*
+aLqkELeq
gi|1254903 133 KALQKELEQ 141
DUF1690: domain 1 of 1, from 137 to 147: score 1.1, E = 4.5
*->eEvEqFKklvr<-*
+E EqF+kl++
gi|1254903 137 KELEQFAKLLK 147
HTH_3: domain 1 of 1, from 146 to 166: score 7.5, E = 0.33
*->lkelRkkkelglsqeeLAeklGskv<-*
lk++R lg++q+++ lG v
gi|1254903 146 LKQKRI--TLGYTQADVGLTLG--V 166
DUF137: domain 1 of 1, from 197 to 213: score 1.0, E = 4.7
*->LeeIVEnyDNkKnLkEv<-*
Le+ VE+ DN++nL+E+
gi|1254903 197 LEKWVEEADNNENLQEI 213
Homeobox: domain 1 of 1, from 224 to 280: score 86.7, E = 6.5e-23
*->rrkRTtftpeQleeLEkeFqknrYPsreeReeLAkkLgLterqVkvW
+rkRT++ + + LE +F k+++Ps +++ ++A++LgL++++V+vW
gi|1254903 224 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVW 270
FQNRRaKwKk<-*
F+NRR+K K+
gi|1254903 271 FCNRRQKGKR 280
DUF1392: domain 1 of 1, from 248 to 269: score 0.8, E = 6.7
*->PtLsqtttEGlCIFPrssqGnkmpnRfsLvrerDLVrV<-*
P+L q+t +n++ L e+D VrV
gi|1254903 248 PSLQQITH--------------IANQLGL--EKDVVRV 269
TFIIB: domain 1 of 1, from 253 to 268: score 2.6, E = 6.1
*->ikrfadaLeLpeKkikVad<-*
i+++a +L+L + V++
gi|1254903 253 ITHIANQLGLEK---DVVR 268
//
|
