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# hmmsearch :: search profile(s) against a sequence database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query HMM file: prot_multi.hmm
# target sequence database: /home/bow/db/hmmer/protdb/uniprot_sprot.fasta
# output directed to file: hmmsearch/text_31b1_hmmsearch_001.out
# per-seq hits tabular output: hmmsearch/tab_31b1_hmmsearch_001.out
# per-dom hits tabular output: hmmsearch/domtab_31b1_hmmsearch_001.out
# pfam-style tabular hit output: hmmsearch/pfamtab_31b1_hmmsearch_001.out
# sequence reporting threshold: score >= 485
# number of worker threads: 2
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query: Globins [M=149]
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
[No hits detected that satisfy reporting thresholds]
Domain annotation for each sequence (and alignments):
[No targets detected that satisfy reporting thresholds]
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (149 nodes)
Target sequences: 544996 (193815432 residues searched)
Passed MSV filter: 20983 (0.0385012); expected 10899.9 (0.02)
Passed bias filter: 17218 (0.0315929); expected 10899.9 (0.02)
Passed Vit filter: 2333 (0.00428077); expected 545.0 (0.001)
Passed Fwd filter: 1115 (0.00204589); expected 5.4 (1e-05)
Initial search space (Z): 544996 [actual number of targets]
Domain search space (domZ): 0 [number of targets reported over threshold]
# CPU time: 7.54u 0.11s 00:00:07.65 Elapsed: 00:00:03.03
# Mc/sec: 9530.86
//
Query: Pkinase [M=260]
Accession: PF00069.17
Description: Protein kinase domain
Scores for complete sequences (score includes all domains):
--- full sequence --- --- best 1 domain --- -#dom-
E-value score bias E-value score bias exp N Sequence Description
------- ------ ----- ------- ------ ----- ---- -- -------- -----------
8.5e-147 492.3 0.0 1.2e-72 249.3 0.0 2.1 2 sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS
2.7e-146 490.7 0.0 8.8e-73 249.7 0.0 2.1 2 sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS
2.2e-145 487.7 0.0 4.7e-72 247.4 0.0 2.1 2 sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS
2.6e-145 487.5 0.0 7.6e-72 246.7 0.0 2.1 2 sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS
Domain annotation for each sequence (and alignments):
>> sp|Q9WUT3|KS6A2_MOUSE Ribosomal protein S6 kinase alpha-2 OS=Mus musculus GN=Rps6ka2 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 241.2 0.0 2.6e-75 3.6e-70 1 260 [] 59 318 .. 59 318 .. 0.95
2 ! 249.3 0.0 8.6e-78 1.2e-72 1 260 [] 415 672 .. 415 672 .. 0.97
Alignments for each domain:
== domain 1 score: 241.2 bits; conditional E-value: 2.6e-75
EEEEEEEEEETTEEEEEEEE...TTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BH CS
Pkinase 1 yelleklGsGsfGkVykakk...kktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdl 85
+ell+ lG+Gs+GkV+ ++k ++ g+ +A+K+lkk + k + + +++ E il++++Hp+ivkl+ +f+t+ +lyl+l++++ggdl
sp|Q9WUT3|KS6A2_MOUSE 59 FELLKVLGQGSYGKVFLVRKvtgSDAGQLYAMKVLKKATLKVRDRVRSKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLRGGDL 146
67899**********7666611155667*****************99999************************************** PP
HHHHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS CS
Pkinase 86 fdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllka 173
f+ l+ke ++ee++k+++ +++ +l++lH gii+rDLKpeNiLld++g++ki+DFGl+k+++ +++++++++gt eYmAPEv++ +
sp|Q9WUT3|KS6A2_MOUSE 147 FTRLSKEVMFTEEDVKFYLAELALALDHLHGLGIIYRDLKPENILLDEEGHIKITDFGLSKEATDHDKRAYSFCGTIEYMAPEVVN-R 233
**************************************************************************************.* PP
-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHT CS
Pkinase 174 keytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilk 256
+++t+++D+Ws+Gv+++e+ltg+lpf+g+ d++e+++ ilk kl ++ s +e+++l++ l++++p +Rl +eei++
sp|Q9WUT3|KS6A2_MOUSE 234 RGHTQSADWWSFGVLMFEMLTGSLPFQGK---DRKETMALILKAKLGMPQFLS----AEAQSLLRALFKRNPCNRLGagvdgVEEIKR 314
*****************************...999999999999999998866....99******************9999999**** PP
SGGG CS
Pkinase 257 hpwl 260
hp++
sp|Q9WUT3|KS6A2_MOUSE 315 HPFF 318
*997 PP
== domain 2 score: 249.3 bits; conditional E-value: 8.6e-78
EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS
Pkinase 1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfd 87
ye++e +G Gs+++++++++k t ++AvKi++k++++ ++ E++il + +Hpni++l +v+ + +++ylv+e+++gg+l d
sp|Q9WUT3|KS6A2_MOUSE 415 YEIKEDIGVGSYSVCKRCVHKATDAEYAVKIIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDGKYVYLVMELMRGGELLD 496
7899***********************************98......9*******99******************************* PP
HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHC CS
Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvll 171
+ +++++se+e+ +++++i++ ++ylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+
sp|Q9WUT3|KS6A2_MOUSE 497 RILRQRCFSEREASDVLYTIARTMDYLHSQGVVHRDLKPSNILYMDESGNpesiRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK 584
*******************************************98544444888********************************** PP
CS-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGG CS
Pkinase 172 kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpw 259
+++y++++DvWslG++ly++l g +pf + +++ +e++++i ++k+ + +++s s+ +kd+++k+l+ dp++Rlta ++lkhpw
sp|Q9WUT3|KS6A2_MOUSE 585 -RQGYDAACDVWSLGILLYTMLAGFTPFANGPDDTPEEILARIGSGKYALSGGNWDSISDAAKDVVSKMLHVDPQQRLTAVQVLKHPW 671
.*************************************************************************************** PP
G CS
Pkinase 260 l 260
+
sp|Q9WUT3|KS6A2_MOUSE 672 I 672
7 PP
>> sp|Q63531|KS6A1_RAT Ribosomal protein S6 kinase alpha-1 OS=Rattus norvegicus GN=Rps6ka1 PE=1 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 239.2 0.0 1.1e-74 1.4e-69 1 258 [. 62 319 .. 62 321 .. 0.94
2 ! 249.7 0.0 6.5e-78 8.8e-73 2 260 .] 419 675 .. 418 675 .. 0.97
Alignments for each domain:
== domain 1 score: 239.2 bits; conditional E-value: 1.1e-74
EEEEEEEEEETTEEE...EEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS
Pkinase 1 yelleklGsGsfGkV...ykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdlfd 87
+ell+ lG+GsfGkV k+++ ++g+ +A+K+lkk + k + + +++ E il+ ++Hp++vkl+ +f+t+ +lyl+l++++ggdlf+
sp|Q63531|KS6A1_RAT 62 FELLKVLGQGSFGKVflvRKVTRPDNGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDLFT 151
67899**********4444555666777****************999999**************************************** PP
HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS-CTH CS
Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllkakeyt 177
l+ke ++ee++k+++ +++ gl++lHs gii+rDLKpeNiLld++g++k++DFGl+k++ +++k+++++gt eYmAPEv++ ++++t
sp|Q63531|KS6A1_RAT 152 RLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN-RQGHT 240
************************************************************************************.***** PP
HHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHTSG CS
Pkinase 178 kkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilkhp 258
+++D+Ws+Gv+++e+ltg+lpf+g+ d++e++ ilk kl ++ s +e+++l++ l++++pa+Rl aeei++h
sp|Q63531|KS6A1_RAT 241 HSADWWSYGVLMFEMLTGSLPFQGK---DRKETMTLILKAKLGMPQFLS----TEAQSLLRALFKRNPANRLGsgpdgAEEIKRHI 319
*************************...999999999999999998866....89*****************98888888888885 PP
== domain 2 score: 249.7 bits; conditional E-value: 6.5e-78
EEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHHHHH CS
Pkinase 2 elleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfdllk 90
++e++G Gs+++++++++k t+ ++AvK+++k++++ ++ E++il + +Hpni++l +v+ +++++ylv+e+++gg+l d +
sp|Q63531|KS6A1_RAT 419 IVKETIGVGSYSVCKRCVHKATNMEYAVKVIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDSKHVYLVTELMRGGELLDKIL 502
6789**********************************98......9*******99********************************** PP
HHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS-CT CS
Pkinase 91 kegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvllkakey 176
+++ +se+e+ +++++i + +eylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+ +++y
sp|Q63531|KS6A1_RAT 503 RQKFFSEREASFVLYTISKTVEYLHSQGVVHRDLKPSNILYVDESGNpeclRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK-RQGY 591
9***************************************98554445999**********************************.**** PP
HHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGGG CS
Pkinase 177 tkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpwl 260
++ +D+WslGv+ly++l g +pf + +++ +e++ +i+++k + ++++ se++kdl++k+l+ dp++Rlta+++l+hpw+
sp|Q63531|KS6A1_RAT 592 DEGCDIWSLGVLLYTMLAGYTPFANGPSDTPEEILTRISSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPWI 675
***********************************************************************************7 PP
>> sp|Q15418|KS6A1_HUMAN Ribosomal protein S6 kinase alpha-1 OS=Homo sapiens GN=RPS6KA1 PE=1 SV=2
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 238.6 0.0 1.6e-74 2.2e-69 1 258 [. 62 319 .. 62 321 .. 0.94
2 ! 247.4 0.0 3.4e-77 4.7e-72 1 260 [] 418 675 .. 418 675 .. 0.97
Alignments for each domain:
== domain 1 score: 238.6 bits; conditional E-value: 1.6e-74
EEEEEEEEEETTEEE...EEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BH CS
Pkinase 1 yelleklGsGsfGkV...ykakkkktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdl 85
+ell+ lG+GsfGkV k+++ ++g+ +A+K+lkk + k + + +++ E il+ ++Hp++vkl+ +f+t+ +lyl+l++++ggdl
sp|Q15418|KS6A1_HUMAN 62 FELLKVLGQGSFGKVflvRKVTRPDSGHLYAMKVLKKATLKVRDRVRTKMERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDL 149
67899**********4444555566667****************999999************************************** PP
HHHHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS CS
Pkinase 86 fdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllka 173
f+ l+ke ++ee++k+++ +++ gl++lHs gii+rDLKpeNiLld++g++k++DFGl+k++ +++k+++++gt eYmAPEv++ +
sp|Q15418|KS6A1_HUMAN 150 FTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN-R 236
**************************************************************************************.* PP
-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHT CS
Pkinase 174 keytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilk 256
+++++++D+Ws+Gv+++e+ltg+lpf+g+ d++e++ ilk kl ++ s +e+++l++ l++++pa+Rl aeei++
sp|Q15418|KS6A1_HUMAN 237 QGHSHSADWWSYGVLMFEMLTGSLPFQGK---DRKETMTLILKAKLGMPQFLS----TEAQSLLRALFKRNPANRLGsgpdgAEEIKR 317
*****************************...999999999999999998866....89*****************988888899888 PP
SG CS
Pkinase 257 hp 258
h
sp|Q15418|KS6A1_HUMAN 318 HV 319
85 PP
== domain 2 score: 247.4 bits; conditional E-value: 3.4e-77
EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS
Pkinase 1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfd 87
y ++e++G Gs+++++++++k t+ ++AvK+++k++++ ++ E++il + +Hpni++l +v+ + +++ylv+e+++gg+l d
sp|Q15418|KS6A1_HUMAN 418 YVVKETIGVGSYSECKRCVHKATNMEYAVKVIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDGKHVYLVTELMRGGELLD 499
67899**********************************98......9*******99******************************* PP
HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHC CS
Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvll 171
+ +++ +se+e+ +++ +i + +eylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+
sp|Q15418|KS6A1_HUMAN 500 KILRQKFFSEREASFVLHTIGKTVEYLHSQGVVHRDLKPSNILYVDESGNpeclRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK 587
***9***************************************98554445999********************************** PP
CS-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGG CS
Pkinase 172 kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpw 259
+++y++ +D+WslG++ly++l g +pf + +++ +e++ +i ++k + ++++ se++kdl++k+l+ dp++Rlta+++l+hpw
sp|Q15418|KS6A1_HUMAN 588 -RQGYDEGCDIWSLGILLYTMLAGYTPFANGPSDTPEEILTRIGSGKFTLSGGNWNTVSETAKDLVSKMLHVDPHQRLTAKQVLQHPW 674
.*************************************************************************************** PP
G CS
Pkinase 260 l 260
+
sp|Q15418|KS6A1_HUMAN 675 V 675
6 PP
>> sp|P18652|KS6AA_CHICK Ribosomal protein S6 kinase 2 alpha OS=Gallus gallus GN=RPS6KA PE=2 SV=1
# score bias c-Evalue i-Evalue hmmfrom hmm to alifrom ali to envfrom env to acc
--- ------ ----- --------- --------- ------- ------- ------- ------- ------- ------- ----
1 ! 239.0 0.0 1.2e-74 1.6e-69 1 259 [. 80 338 .. 80 339 .. 0.95
2 ! 246.7 0.0 5.6e-77 7.6e-72 1 260 [] 435 692 .. 435 692 .. 0.97
Alignments for each domain:
== domain 1 score: 239.0 bits; conditional E-value: 1.2e-74
EEEEEEEEEETTEEEEEEEET...TTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHHSSSSB--EEEEEEETTEEEEEEE--TS-BH CS
Pkinase 1 yelleklGsGsfGkVykakkk...ktgkkvAvKilkkeeekskkektavrElkilkklsHpnivkllevfetkdelylvleyveggdl 85
+ell+ lG+GsfGkV+ ++k ++++ +A+K+lkk + k + + +++ E il+ ++Hp++vkl+ +f+t+ +lyl+l++++ggdl
sp|P18652|KS6AA_CHICK 80 FELLKVLGQGSFGKVFLVRKItppDSNHLYAMKVLKKATLKVRDRVRTKIERDILADVNHPFVVKLHYAFQTEGKLYLILDFLRGGDL 167
67899**********7777661115677**************99999888************************************** PP
HHHHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEEEE--GTT.E..EECSS-C-S--S-GGGS-HHHHCCS CS
Pkinase 86 fdllkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgevkiaDFGlakkleksseklttlvgtreYmAPEvllka 173
f+ l+ke ++ee++k+++ +++ gl++lHs gii+rDLKpeNiLld++g++k++DFGl+k++ +++k+++++gt eYmAPEv++ +
sp|P18652|KS6AA_CHICK 168 FTRLSKEVMFTEEDVKFYLAELALGLDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVN-R 254
**************************************************************************************.* PP
-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTT.....HHHHHT CS
Pkinase 174 keytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRlt.....aeeilk 256
+++++++D+Ws+Gv+++e+ltg+lpf+g+ d++e++ ilk kl ++ s +e+++l++ l++++pa+Rl aeei++
sp|P18652|KS6AA_CHICK 255 QGHSHSADWWSYGVLMFEMLTGSLPFQGK---DRKETMTLILKAKLGMPQFLS----AEAQSLLRALFKRNPANRLGsgpdgAEEIKR 335
*****************************...999999999999999998866....99*****************999999****** PP
SGG CS
Pkinase 257 hpw 259
hp+
sp|P18652|KS6AA_CHICK 336 HPF 338
*98 PP
== domain 2 score: 246.7 bits; conditional E-value: 5.6e-77
EEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEHHHCCCCCCHHHHHHHHHHHHH.SSSSB--EEEEEEETTEEEEEEE--TS-BHHH CS
Pkinase 1 yelleklGsGsfGkVykakkkktgkkvAvKilkkeeekskkektavrElkilkkl.sHpnivkllevfetkdelylvleyveggdlfd 87
y ++e +G Gs+++++++++k+t+ ++AvK+++k++++ ++ E++il + +Hpni++l +v+ + +++ylv+e+++gg+l d
sp|P18652|KS6AA_CHICK 435 YVVKEAIGVGSYSVCKRCIHKTTNMEYAVKVIDKSKRDPSE------EIEILLRYgQHPNIITLKDVYDDGKYVYLVTELMRGGELLD 516
568899*********************************98......9*******99******************************* PP
HHHHHHST-HHHHHHHHHHHHHHHHHHHHTTEE-S--SGGGEEEETTTEE....EE--GTT.E..EECSS-C-S--S-GGGS-HHHHC CS
Pkinase 88 llkkegklseeeikkialqilegleylHsngiiHrDLKpeNiLldkkgev....kiaDFGlakkleksseklttlvgtreYmAPEvll 171
+ +++ +se+e+ +++ +i++ +eylHs+g++HrDLKp+NiL +++ +i+DFG+ak+l +++ l t + t +++APEvl+
sp|P18652|KS6AA_CHICK 517 KILRQKFFSEREASSVLHTICKTVEYLHSQGVVHRDLKPSNILYVDESGNpesiRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLK 604
***9***************************************98554444888********************************** PP
CS-CTHHHHHHHHHHHHHHHHHHSS-TTSSSHHCCTHHHHSSHHH......TTS.....HHHHHHHHHHT-SSGGGSTTHHHHHTSGG CS
Pkinase 172 kakeytkkvDvWslGvilyelltgklpfsgeseedqleliekilkkkleedepkssskseelkdlikkllekdpakRltaeeilkhpw 259
+++y++ +D+WslGv+ly++l g++pf + +++ +e++ +i ++k + + ++++ s+ +kdl++k+l+ dp++Rlta+++l+hpw
sp|P18652|KS6AA_CHICK 605 -RQGYDEGCDIWSLGVLLYTMLAGCTPFANGPSDTPEEILTRIGGGKFSVNGGNWDTISDVAKDLVSKMLHVDPHQRLTAKQVLQHPW 691
.*************************************************************************************** PP
G CS
Pkinase 260 l 260
+
sp|P18652|KS6AA_CHICK 692 I 692
7 PP
Internal pipeline statistics summary:
-------------------------------------
Query model(s): 1 (260 nodes)
Target sequences: 544996 (193815432 residues searched)
Passed MSV filter: 21465 (0.0393856); expected 10899.9 (0.02)
Passed bias filter: 16124 (0.0295855); expected 10899.9 (0.02)
Passed Vit filter: 5070 (0.00930282); expected 545.0 (0.001)
Passed Fwd filter: 4036 (0.00740556); expected 5.4 (1e-05)
Initial search space (Z): 544996 [actual number of targets]
Domain search space (domZ): 4 [number of targets reported over threshold]
# CPU time: 22.47u 0.13s 00:00:22.60 Elapsed: 00:00:10.11
# Mc/sec: 4984.37
//
[ok]
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