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#FormatVersion Mauve1
#Sequence1File equCab1.fa
#Sequence1Format FastA
#Sequence2File canFam2.fa
#Sequence2Format FastA
#Sequence3File mm9.fa
#Sequence3Format FastA
#BackboneFile separate.xmfa.bbcols
> 1:0-0 + equCab1.fa
------------------------
> 2:26-49 + canFam2.fa
GTCCCGGGCCCTGCTTTCCTTTTC
> 3:1-24 - mm9.fa
GCCAGGGATCTACTTTTCCTCTTC
=
> 1:1-50 + equCab1.fa
GAAAAGGAAAGTACGGCCCGGCCACTCCGGGTGTGTGCTAGGAGGGCTTA
=
> 2:1-25 + canFam2.fa
CAAGCCCTGCGCGCTCAGCCGGAGT
=
> 3:25-41 + mm9.fa
GTCCGGAGCTGGGACGT
=
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