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# STOCKHOLM 1.0
#=GF AC RF01113
#=GF ID BMV3_UPD-PK3
#=GF DE Pseudoknot of upstream pseudoknot domain (UPD) of the 3'UTR
#=GF AU Wilkinson A; 0000-0001-7406-0151
#=GF SE Pseudobase
#=GF SS Pseudobase
#=GF GA 36.00
#=GF TC 37.00
#=GF NC 33.30
#=GF TP Cis-reg;
#=GF BM cmbuild -F CM SEED
#=GF CB cmcalibrate --mpi CM
#=GF SM cmsearch --cpu 4 --verbose --nohmmonly -T 28.00 -Z 549862.597050 CM SEQDB
#=GF DR PKBASE; PKB00156;
#=GF DR SO; 0005836; regulatory_region;
#=GF DR GO; 1904973; positive regulation of viral translation;
#=GF DR GO; 0046782; regulation of viral transcription;
#=GF RN [1]
#=GF RM 7684465
#=GF RT Contributions of the brome mosaic virus RNA-3 3'-nontranslated region to
#=GF RT replication and translation.
#=GF RA Lahser FC, Marsh LE, Hall TC
#=GF RL J Virol. 1993;67:3295-3303.
#=GF WK UPSK_RNA
#=GF ** seedtax: Viruses; unclassified sequences
#=GF SQ 2
X01678.1/2648-2670 ACUUUGGCUAAGUUUAAAAGCUU
X58459.1/659-681 ACUUUGGCUAAGGUUAAAAGCUU
#=GC SS_cons :<<<_AAAA>>>::::::aaaa:
#=GC RF ACUUUGGCUAAGuUUAAAAGCUU
//
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