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d | rwxr-xr-x | 4,096 | Abi |
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d | rwxr-xr-x | 82 | Ace |
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d | rwxr-xr-x | 70 | Affy |
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d | rwxr-xr-x | 4,096 | Align |
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d | rwxr-xr-x | 120 | BWA |
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d | rwxr-xr-x | 115 | BioSQL |
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d | rwxr-xr-x | 4,096 | Blast |
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d | rwxr-xr-x | 4,096 | Blat |
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d | rwxr-xr-x | 30 | CDAO |
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d | rwxr-xr-x | 91 | Cellosaurus |
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d | rwxr-xr-x | 4,096 | Clustalw |
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d | rwxr-xr-x | 47 | Cluster |
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d | rwxr-xr-x | 45 | CodonUsage |
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d | rwxr-xr-x | 48 | Compass |
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d | rwxr-xr-x | 4,096 | EMBL |
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d | rwxr-xr-x | 4,096 | Emboss |
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d | rwxr-xr-x | 4,096 | Entrez |
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d | rwxr-xr-x | 101 | Enzymes |
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d | rwxr-xr-x | 4,096 | Exonerate |
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d | rwxr-xr-x | 34 | ExtendedPhylip |
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d | rwxr-xr-x | 30 | FSSP |
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d | rwxr-xr-x | 4,096 | Fasta |
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d | rwxr-xr-x | 4,096 | GFA |
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d | rwxr-xr-x | 129 | GFF |
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d | rwxr-xr-x | 35 | Gck |
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d | rwxr-xr-x | 4,096 | GenBank |
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d | rwxr-xr-x | 4,096 | Geo |
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d | rwxr-xr-x | 27 | Graphics |
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d | rwxr-xr-x | 4,096 | HHsuite |
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d | rwxr-xr-x | 4,096 | Hmmer |
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d | rwxr-xr-x | 93 | IntelliGenetics |
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d | rwxr-xr-x | 33 | InterProScan |
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d | rwxr-xr-x | 4,096 | KEGG |
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d | rwxr-xr-x | 4,096 | MAF |
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d | rwxr-xr-x | 4,096 | Mauve |
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d | rwxr-xr-x | 97 | Medline |
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d | rwxr-xr-x | 4,096 | MetaTool |
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d | rwxr-xr-x | 120 | NBRF |
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d | rwxr-xr-x | 55 | NMR |
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d | rwxr-xr-x | 4,096 | NeXML |
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d | rwxr-xr-x | 57 | NeuralNetwork |
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d | rwxr-xr-x | 4,096 | Nexus |
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d | rwxr-xr-x | 4,096 | Nib |
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d | rwxr-xr-x | 114 | PAML |
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d | rwxr-xr-x | 4,096 | PDB |
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d | rwxr-xr-x | 29 | PQR |
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d | rwxr-xr-x | 79 | Phd |
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d | rwxr-xr-x | 4,096 | Phylip |
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d | rwxr-xr-x | 4,096 | PhyloXML |
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d | rwxr-xr-x | 4,096 | PopGen |
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d | rwxr-xr-x | 156 | Prosite |
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d | rwxr-xr-x | 4,096 | Quality |
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d | rwxr-xr-x | 4,096 | Rebase |
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d | rwxr-xr-x | 69 | Registry |
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d | rwxr-xr-x | 4,096 | Roche |
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d | rwxr-xr-x | 4,096 | SCOP |
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d | rwxr-xr-x | 29 | Saf |
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d | rwxr-xr-x | 4,096 | SamBam |
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d | rwxr-xr-x | 4,096 | SeqXML |
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d | rwxr-xr-x | 104 | SnapGene |
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d | rwxr-xr-x | 4,096 | Stockholm |
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d | rwxr-xr-x | 4,096 | SubsMat |
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d | rwxr-xr-x | 4,096 | SwissProt |
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d | rwxr-xr-x | 4,096 | TreeConstruction |
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d | rwxr-xr-x | 132 | TwoBit |
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d | rwxr-xr-x | 83 | UniGene |
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d | rwxr-xr-x | 4,096 | UniProt |
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d | rwxr-xr-x | 82 | Xdna |
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d | rwxr-xr-x | 4,096 | codonalign |
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d | rwxr-xr-x | 4,096 | motifs |
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d | rwxr-xr-x | 54 | msf |
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d | rwxr-xr-x | 4,096 | phenotype |
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- | rw-r--r-- | 582 | .coveragerc |
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- | rw-r--r-- | 795 | biosql.ini.appveyor |
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- | rw-r--r-- | 706 | biosql.ini.sample |
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- | rw-r--r-- | 66,712 | common_BioSQL.py |
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- | rw-r--r-- | 4,512 | common_BioSQL_online.py |
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- | rwxr-xr-x | 27,414 | pairwise2_testCases.py |
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- | rw-r--r-- | 1,212 | requires_internet.py |
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- | rwxr-xr-x | 12,084 | run_tests.py |
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- | rw-r--r-- | 6,444 | search_tests_common.py |
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- | rw-r--r-- | 13,509 | seq_tests_common.py |
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- | rw-r--r-- | 121,943 | test_Ace.py |
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- | rw-r--r-- | 13,848 | test_Affy.py |
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- | rw-r--r-- | 68,513 | test_AlignIO.py |
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- | rw-r--r-- | 14,578 | test_AlignIO_ClustalIO.py |
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- | rw-r--r-- | 2,725 | test_AlignIO_EmbossIO.py |
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- | rw-r--r-- | 44,198 | test_AlignIO_FastaIO.py |
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- | rw-r--r-- | 5,254 | test_AlignIO_MauveIO.py |
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- | rw-r--r-- | 4,583 | test_AlignIO_PhylipIO.py |
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- | rw-r--r-- | 3,587 | test_AlignIO_convert.py |
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- | rw-r--r-- | 9,322 | test_AlignInfo.py |
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- | rw-r--r-- | 148,271 | test_Align_Alignment.py |
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- | rw-r--r-- | 44,253 | test_Align_a2m.py |
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- | rw-r--r-- | 422,089 | test_Align_bed.py |
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- | rw-r--r-- | 142,012 | test_Align_bigbed.py |
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- | rw-r--r-- | 591,481 | test_Align_bigmaf.py |
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- | rw-r--r-- | 186,353 | test_Align_bigpsl.py |
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- | rw-r--r-- | 158,867 | test_Align_chain.py |
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- | rw-r--r-- | 51,754 | test_Align_clustal.py |
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- | rw-r--r-- | 559,515 | test_Align_codonalign.py |
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- | rw-r--r-- | 145,316 | test_Align_emboss.py |
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- | rw-r--r-- | 199,622 | test_Align_exonerate.py |
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- | rw-r--r-- | 41,894 | test_Align_fasta.py |
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- | rw-r--r-- | 862,778 | test_Align_hhr.py |
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- | rw-r--r-- | 690,495 | test_Align_maf.py |
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- | rw-r--r-- | 25,938 | test_Align_mauve.py |
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- | rw-r--r-- | 23,229 | test_Align_msf.py |
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- | rw-r--r-- | 14,547 | test_Align_nexus.py |
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- | rw-r--r-- | 43,379 | test_Align_phylip.py |
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- | rw-r--r-- | 301,480 | test_Align_psl.py |
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- | rw-r--r-- | 239,830 | test_Align_sam.py |
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- | rw-r--r-- | 468,492 | test_Align_stockholm.py |
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- | rw-r--r-- | 1,352,744 | test_Align_tabular.py |
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- | rw-r--r-- | 4,483 | test_Application.py |
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- | rw-r--r-- | 7,998 | test_BWA_tool.py |
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- | rw-r--r-- | 810 | test_BioSQL_MySQLdb.py |
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- | rw-r--r-- | 1,022 | test_BioSQL_MySQLdb_online.py |
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- | rw-r--r-- | 827 | test_BioSQL_mysql_connector.py |
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- | rw-r--r-- | 1,031 | test_BioSQL_mysql_connector_online.py |
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- | rw-r--r-- | 805 | test_BioSQL_psycopg2.py |
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- | rw-r--r-- | 1,025 | test_BioSQL_psycopg2_online.py |
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- | rw-r--r-- | 2,602 | test_BioSQL_sqlite3.py |
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- | rw-r--r-- | 1,076 | test_BioSQL_sqlite3_online.py |
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- | rw-r--r-- | 1,063 | test_Blast_Record.py |
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- | rw-r--r-- | 703,838 | test_Blast_parser.py |
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- | rw-r--r-- | 6,676 | test_CAPS.py |
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- | rw-r--r-- | 1,160 | test_Chi2.py |
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- | rw-r--r-- | 18,270 | test_ClustalOmega_tool.py |
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- | rw-r--r-- | 12,079 | test_Clustalw_tool.py |
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- | rw-r--r-- | 111,233 | test_Cluster.py |
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- | rw-r--r-- | 35,447 | test_CodonTable.py |
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- | rw-r--r-- | 4,287 | test_ColorSpiral.py |
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- | rw-r--r-- | 4,002 | test_Compass.py |
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- | rw-r--r-- | 7,916 | test_Consensus.py |
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- | rw-r--r-- | 4,893 | test_Dialign_tool.py |
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- | rw-r--r-- | 3,074 | test_EMBL_unittest.py |
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- | rw-r--r-- | 37,984 | test_Emboss.py |
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- | rw-r--r-- | 13,198 | test_EmbossPhylipNew.py |
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- | rw-r--r-- | 9,309 | test_EmbossPrimer.py |
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- | rw-r--r-- | 16,227 | test_Entrez.py |
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- | rw-r--r-- | 9,875 | test_Entrez_online.py |
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- | rw-r--r-- | 597,141 | test_Entrez_parser.py |
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- | rw-r--r-- | 6,332 | test_Enzyme.py |
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- | rw-r--r-- | 1,787 | test_ExPASy.py |
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- | rw-r--r-- | 6,057 | test_Fasttree_tool.py |
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- | rw-r--r-- | 4,108 | test_File.py |
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- | rw-r--r-- | 381,840 | test_GenBank.py |
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- | rw-r--r-- | 47,046 | test_GenomeDiagram.py |
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- | rw-r--r-- | 4,440 | test_GraphicsBitmaps.py |
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- | rw-r--r-- | 38,715 | test_GraphicsChromosome.py |
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- | rw-r--r-- | 2,677 | test_GraphicsDistribution.py |
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- | rw-r--r-- | 2,593 | test_GraphicsGeneral.py |
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- | rw-r--r-- | 4,959 | test_HMMCasino.py |
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- | rw-r--r-- | 15,756 | test_HMMGeneral.py |
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- | rw-r--r-- | 8,233 | test_KEGG.py |
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- | rw-r--r-- | 10,641 | test_KEGG_online.py |
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- | rw-r--r-- | 7,785 | test_KGML_graphics.py |
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- | rw-r--r-- | 2,711 | test_KGML_graphics_online.py |
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- | rw-r--r-- | 4,783 | test_KGML_nographics.py |
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- | rw-r--r-- | 5,892 | test_KeyWList.py |
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- | rw-r--r-- | 4,381 | test_LogisticRegression.py |
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- | rw-r--r-- | 5,846 | test_MSAProbs_tool.py |
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- | rw-r--r-- | 32,437 | test_MafIO_index.py |
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- | rw-r--r-- | 7,535 | test_Mafft_tool.py |
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- | rw-r--r-- | 22,878 | test_MarkovModel.py |
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- | rw-r--r-- | 20,479 | test_Medline.py |
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- | rw-r--r-- | 18,302 | test_Muscle_tool.py |
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- | rw-r--r-- | 194,169 | test_NCBIXML.py |
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- | rw-r--r-- | 17,056 | test_NCBI_BLAST_tools.py |
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- | rw-r--r-- | 16,589 | test_NCBI_qblast.py |
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- | rw-r--r-- | 5,068 | test_NMR.py |
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- | rw-r--r-- | 4,270 | test_NaiveBayes.py |
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- | rw-r--r-- | 62,903 | test_Nexus.py |
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- | rw-r--r-- | 12,295 | test_PAML_baseml.py |
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- | rw-r--r-- | 26,828 | test_PAML_codeml.py |
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- | rw-r--r-- | 4,898 | test_PAML_tools.py |
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- | rw-r--r-- | 7,165 | test_PAML_yn00.py |
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- | rw-r--r-- | 3,589 | test_PDB_CEAligner.py |
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- | rw-r--r-- | 10,937 | test_PDB_DSSP.py |
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- | rw-r--r-- | 2,184 | test_PDB_Dice.py |
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- | rw-r--r-- | 7,550 | test_PDB_Disordered.py |
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- | rw-r--r-- | 5,228 | test_PDB_Exposure.py |
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- | rw-r--r-- | 1,328 | test_PDB_FragmentMapper.py |
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- | rw-r--r-- | 7,823 | test_PDB_KDTree.py |
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- | rw-r--r-- | 17,681 | test_PDB_MMCIF2Dict.py |
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- | rw-r--r-- | 8,603 | test_PDB_MMCIFIO.py |
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- | rw-r--r-- | 17,263 | test_PDB_MMCIFParser.py |
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- | rw-r--r-- | 2,417 | test_PDB_NACCESS.py |
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- | rw-r--r-- | 16,204 | test_PDB_PDBIO.py |
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- | rw-r--r-- | 8,347 | test_PDB_PDBList.py |
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- | rw-r--r-- | 1,628 | test_PDB_PDBMLParser.py |
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- | rw-r--r-- | 29,499 | test_PDB_PDBParser.py |
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- | rw-r--r-- | 3,558 | test_PDB_PSEA.py |
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- | rw-r--r-- | 6,814 | test_PDB_Polypeptide.py |
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- | rw-r--r-- | 4,953 | test_PDB_QCPSuperimposer.py |
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- | rw-r--r-- | 4,504 | test_PDB_ResidueDepth.py |
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- | rw-r--r-- | 5,587 | test_PDB_SASA.py |
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- | rw-r--r-- | 20,489 | test_PDB_SMCRA.py |
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- | rw-r--r-- | 5,947 | test_PDB_Selection.py |
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- | rw-r--r-- | 2,102 | test_PDB_StructureAlignment.py |
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- | rw-r--r-- | 6,484 | test_PDB_Superimposer.py |
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- | rw-r--r-- | 741 | test_PDB_alphafold_db.py |
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- | rw-r--r-- | 753 | test_PDB_binary_cif.py |
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- | rw-r--r-- | 27,426 | test_PDB_internal_coords.py |
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- | rw-r--r-- | 8,512 | test_PDB_parse_pdb_header.py |
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- | rw-r--r-- | 11,173 | test_PDB_vectors.py |
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- | rw-r--r-- | 7,264 | test_PQR.py |
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- | rw-r--r-- | 8,512 | test_Pathway.py |
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- | rw-r--r-- | 20,470 | test_Phd.py |
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- | rw-r--r-- | 22,592 | test_Phylo.py |
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- | rw-r--r-- | 31,498 | test_PhyloXML.py |
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- | rw-r--r-- | 3,270 | test_Phylo_CDAO.py |
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- | rw-r--r-- | 3,250 | test_Phylo_NeXML.py |
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- | rw-r--r-- | 2,020 | test_Phylo_igraph.py |
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- | rw-r--r-- | 3,631 | test_Phylo_matplotlib.py |
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- | rw-r--r-- | 1,154 | test_Phylo_networkx.py |
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- | rw-r--r-- | 3,884 | test_PopGen_GenePop.py |
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- | rw-r--r-- | 4,422 | test_PopGen_GenePop_EasyController.py |
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- | rw-r--r-- | 7,420 | test_PopGen_GenePop_nodepend.py |
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- | rw-r--r-- | 8,528 | test_Prank_tool.py |
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- | rw-r--r-- | 4,102 | test_Probcons_tool.py |
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- | rw-r--r-- | 13,453 | test_ProtParam.py |
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- | rw-r--r-- | 2,572 | test_RCSBFormats.py |
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- | rw-r--r-- | 25,391 | test_Restriction.py |
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- | rw-r--r-- | 2,265 | test_SCOP_Astral.py |
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- | rw-r--r-- | 3,408 | test_SCOP_Cla.py |
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- | rw-r--r-- | 1,874 | test_SCOP_Des.py |
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- | rw-r--r-- | 1,763 | test_SCOP_Dom.py |
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- | rw-r--r-- | 1,318 | test_SCOP_Hie.py |
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- | rw-r--r-- | 4,199 | test_SCOP_Raf.py |
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- | rw-r--r-- | 2,354 | test_SCOP_Residues.py |
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- | rw-r--r-- | 5,423 | test_SCOP_Scop.py |
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- | rw-r--r-- | 4,294 | test_SVDSuperimposer.py |
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- | rw-r--r-- | 40,380 | test_SearchIO_blast_tab.py |
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- | rw-r--r-- | 9,732 | test_SearchIO_blast_tab_index.py |
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- | rw-r--r-- | 172,978 | test_SearchIO_blast_xml.py |
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- | rw-r--r-- | 38,120 | test_SearchIO_blast_xml_index.py |
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- | rw-r--r-- | 60,568 | test_SearchIO_blat_psl.py |
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- | rw-r--r-- | 2,609 | test_SearchIO_blat_psl_index.py |
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- | rw-r--r-- | 111,022 | test_SearchIO_exonerate.py |
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- | rw-r--r-- | 955 | test_SearchIO_exonerate_text_index.py |
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- | rw-r--r-- | 968 | test_SearchIO_exonerate_vulgar_index.py |
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- | rw-r--r-- | 139,531 | test_SearchIO_fasta_m10.py |
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- | rw-r--r-- | 2,173 | test_SearchIO_fasta_m10_index.py |
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- | rw-r--r-- | 21,779 | test_SearchIO_hhsuite2_text.py |
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- | rw-r--r-- | 23,046 | test_SearchIO_hmmer2_text.py |
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- | rw-r--r-- | 23,810 | test_SearchIO_hmmer2_text_index.py |
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- | rw-r--r-- | 27,800 | test_SearchIO_hmmer3_domtab.py |
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- | rw-r--r-- | 5,490 | test_SearchIO_hmmer3_domtab_index.py |
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- | rw-r--r-- | 20,419 | test_SearchIO_hmmer3_tab.py |
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- | rw-r--r-- | 4,534 | test_SearchIO_hmmer3_tab_index.py |
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- | rw-r--r-- | 128,263 | test_SearchIO_hmmer3_text.py |
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- | rw-r--r-- | 18,801 | test_SearchIO_hmmer3_text_index.py |
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- | rw-r--r-- | 2,678 | test_SearchIO_interproscan_xml.py |
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- | rw-r--r-- | 67,810 | test_SearchIO_model.py |
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- | rw-r--r-- | 9,439 | test_SearchIO_write.py |
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- | rw-r--r-- | 15,330 | test_SeqFeature.py |
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- | rw-r--r-- | 233,607 | test_SeqIO.py |
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- | rw-r--r-- | 577,980 | test_SeqIO_AbiIO.py |
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- | rw-r--r-- | 9,128 | test_SeqIO_FastaIO.py |
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- | rw-r--r-- | 3,547 | test_SeqIO_Gck.py |
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- | rw-r--r-- | 3,339 | test_SeqIO_Gfa.py |
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- | rw-r--r-- | 5,767 | test_SeqIO_Insdc.py |
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- | rw-r--r-- | 2,068 | test_SeqIO_NibIO.py |
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- | rw-r--r-- | 7,625 | test_SeqIO_PdbIO.py |
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- | rw-r--r-- | 43,543 | test_SeqIO_QualityIO.py |
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- | rw-r--r-- | 10,375 | test_SeqIO_SeqXML.py |
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- | rw-r--r-- | 21,773 | test_SeqIO_SffIO.py |
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- | rw-r--r-- | 12,207 | test_SeqIO_SnapGene.py |
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- | rw-r--r-- | 22,096 | test_SeqIO_TwoBitIO.py |
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- | rw-r--r-- | 26,919 | test_SeqIO_UniprotIO.py |
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- | rw-r--r-- | 8,321 | test_SeqIO_Xdna.py |
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- | rw-r--r-- | 57,877 | test_SeqIO_features.py |
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- | rw-r--r-- | 31,453 | test_SeqIO_index.py |
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- | rw-r--r-- | 3,529 | test_SeqIO_online.py |
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- | rw-r--r-- | 10,705 | test_SeqIO_write.py |
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- | rw-r--r-- | 23,772 | test_SeqRecord.py |
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- | rw-r--r-- | 19,390 | test_SeqUtils.py |
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- | rw-r--r-- | 86,387 | test_Seq_objs.py |
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- | rw-r--r-- | 341,375 | test_SwissProt.py |
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- | rw-r--r-- | 7,192 | test_TCoffee_tool.py |
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- | rw-r--r-- | 21,929 | test_TogoWS.py |
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- | rw-r--r-- | 20,128 | test_TreeConstruction.py |
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- | rw-r--r-- | 10,375 | test_Tutorial.py |
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- | rw-r--r-- | 74,989 | test_UniGene.py |
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- | rw-r--r-- | 3,384 | test_UniProt.py |
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- | rw-r--r-- | 7,682 | test_UniProt_GOA.py |
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- | rw-r--r-- | 6,292 | test_XXmotif_tool.py |
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- | rw-r--r-- | 65,423 | test_align.py |
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- | rw-r--r-- | 142,224 | test_align_substitution_matrices.py |
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- | rw-r--r-- | 20,642 | test_bgzf.py |
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- | rw-r--r-- | 10,765 | test_cellosaurus.py |
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- | rw-r--r-- | 17,858 | test_codonalign.py |
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- | rw-r--r-- | 289,276 | test_geo.py |
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- | rw-r--r-- | 3,642 | test_kNN.py |
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- | rw-r--r-- | 10,676 | test_mmtf.py |
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- | rw-r--r-- | 1,078 | test_mmtf_online.py |
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- | rw-r--r-- | 341,961 | test_motifs.py |
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- | rw-r--r-- | 1,709 | test_motifs_online.py |
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- | rw-r--r-- | 844 | test_pairwise2.py |
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- | rw-r--r-- | 1,150 | test_pairwise2_no_C.py |
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- | rw-r--r-- | 198,420 | test_pairwise_aligner.py |
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- | rw-r--r-- | 42,062 | test_pairwise_alignment_map.py |
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- | rw-r--r-- | 13,153 | test_phenotype.py |
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- | rw-r--r-- | 2,482 | test_phenotype_fit.py |
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- | rw-r--r-- | 2,840 | test_phyml_tool.py |
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- | rw-r--r-- | 57,975 | test_prodoc.py |
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- | rw-r--r-- | 251,003 | test_prosite.py |
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- | rw-r--r-- | 2,457 | test_raxml_tool.py |
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- | rw-r--r-- | 10,901 | test_samtools_tool.py |
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- | rw-r--r-- | 51,821 | test_seq.py |
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- | rw-r--r-- | 3,286 | test_translate.py |