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#Ignore the build directory (and its sub-directories):
build
#Ignore the distribution directory
dist
#Ignore backup files from some Unix editors,
\#*\#
*~
*.swp
*.bak
#Ignore patches and any original files created by patch command
*.diff
*.patch
*.orig
*.rej
#Ignore these hidden files from Mac OS X
.DS_Store
#Ignore hidden files from Dolphin window manager
.directory
#Ignore all compiled python files (e.g. from running the unit tests):
*.pyc
*.pyo
*.py-e
*.pyd
#Ignore all Jython class files (present if using Jython)
*.class
#Ignore any compiled C code
*.so
#Ignore the .tox directory from running tox locally
.tox/
#Ignore the MANIFEST file created automatically from MANIFEST.in
MANIFEST
#Ignore potential directory created during install:
biopython.egg-info
#The graphics unit tests produce output files for human inspection
#(at the time of writing, only PDF and PNG files are created)
Tests/Graphics/*.pdf
Tests/Graphics/*.eps
Tests/Graphics/*.svg
Tests/Graphics/*.png
# This file is downloaded when testing the Bio.SeqIO.GckIO module.
Tests/Gck/DGVC_GCK.zip
#Ignore the local BioSQL test settings:
Tests/biosql.ini
#TODO - The unit tests shouldn't leave temp files after running:
Tests/BioSQL/temp_sqlite.db
Tests/BioSQL/temp_sqlite.db-journal
Tests/Cluster/cyano_result*
# Created by Tests/test_BWA_tool.py:
Tests/out.bam
#TODO - The Tutorial doctests should leave example files after
#running Tests/test_Tutorial.py
Doc/examples/other_trees.nwk
Doc/examples/tree1.nwk
#Ignore LaTeX temp files, and compiled output
Doc/*.aux
Doc/*.gz
Doc/*.log
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Doc/*.toc
Doc/*.haux
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Doc/_build/
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Doc/install/Installation.txt
Doc/install/Installation.pdf
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Doc/cookbook/motif/motif.pdf
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#Ignore the hevea.sty file if present (used for HTML docs)
Doc/hevea.sty
Doc/*/hevea.sty
Doc/*/*/hevea.sty
#Ignore artifacts of building the docs
_build
Doc/api/*.rst
#Ignore IntelliJ IDEA directory and project files
.idea
*.iml
#Ignore unittest cache directory
.cache/
#Ignore vscode directory
.vscode
#Ignore mypy cache directory
.mypy_cache
#Ignore virtual environments
.env
.venv
env/
venv/
ENV/
# Testing
**/.coverage
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