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<?xml version="1.0" ?>
<!-- ============================================
::DATATOOL:: Generated from "blastxml2.asn"
::DATATOOL:: by application DATATOOL version 2.4.4
::DATATOOL:: on 09/23/2015 23:04:21
============================================ -->
<xs:schema
xmlns:xs="http://www.w3.org/2001/XMLSchema"
xmlns:ncbi="http://www.ncbi.nlm.nih.gov"
xmlns="http://www.ncbi.nlm.nih.gov"
targetNamespace="http://www.ncbi.nlm.nih.gov"
elementFormDefault="qualified"
attributeFormDefault="unqualified">
<!-- ============================================ -->
<!-- This section is mapped from module "NCBI-BlastOutput2"
================================================= -->
<xs:element name="BlastOutput2">
<xs:complexType>
<xs:sequence>
<xs:element name="report" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element ref="Report"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="error" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element ref="Err"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="BlastXML2">
<xs:complexType>
<xs:sequence minOccurs="0" maxOccurs="unbounded">
<xs:element ref="BlastOutput2"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Report">
<xs:complexType>
<xs:sequence>
<!-- BLAST program: blastp, tblastx etc. -->
<xs:element name="program" type="xs:string"/>
<!-- Program version -->
<xs:element name="version" type="xs:string"/>
<!-- Steven, David, Tom and others -->
<xs:element name="reference" type="xs:string"/>
<xs:element name="search-target">
<xs:complexType>
<xs:sequence>
<xs:element ref="Target"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- search parameters -->
<xs:element name="params">
<xs:complexType>
<xs:sequence>
<xs:element ref="Parameters"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="results">
<xs:complexType>
<xs:sequence>
<xs:element ref="Results"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Err">
<xs:complexType>
<xs:sequence>
<xs:element name="code" type="xs:integer"/>
<xs:element name="message" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Target">
<xs:complexType>
<xs:choice>
<!-- BLAST Database name -->
<xs:element name="db" type="xs:string"/>
<!-- Subject IDs -->
<xs:element name="subjects" type="xs:string" maxOccurs="unbounded"/>
</xs:choice>
</xs:complexType>
</xs:element>
<xs:element name="Results">
<xs:complexType>
<xs:choice>
<xs:element name="iterations">
<xs:complexType>
<xs:sequence minOccurs="0" maxOccurs="unbounded">
<xs:element ref="Iteration"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!--
iterative search (psi and delta blast)
db search
-->
<xs:element name="search">
<xs:complexType>
<xs:sequence>
<xs:element ref="Search"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- bl2seq -->
<xs:element name="bl2seq">
<xs:complexType>
<xs:sequence minOccurs="0" maxOccurs="unbounded">
<xs:element ref="Search"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:choice>
</xs:complexType>
</xs:element>
<xs:element name="Iteration">
<xs:complexType>
<xs:sequence>
<!-- iteration number (use with psiblast) -->
<xs:element name="iter-num" type="xs:integer"/>
<xs:element name="search">
<xs:complexType>
<xs:sequence>
<xs:element ref="Search"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Search">
<xs:complexType>
<xs:sequence>
<!-- SeqId of query -->
<xs:element name="query-id" type="xs:string" minOccurs="0"/>
<!-- Definition line of query -->
<xs:element name="query-title" type="xs:string" minOccurs="0"/>
<!-- length of query sequence -->
<xs:element name="query-len" type="xs:integer" minOccurs="0"/>
<!-- Masked offsets. -->
<xs:element name="query-masking" minOccurs="0">
<xs:complexType>
<xs:sequence minOccurs="0" maxOccurs="unbounded">
<xs:element ref="Range"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- Hits one for every db sequence -->
<xs:element name="hits" minOccurs="0">
<xs:complexType>
<xs:sequence minOccurs="0" maxOccurs="unbounded">
<xs:element ref="Hit"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- search statistics -->
<xs:element name="stat" minOccurs="0">
<xs:complexType>
<xs:sequence>
<xs:element ref="Statistics"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- Some (error?) information -->
<xs:element name="message" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Parameters">
<xs:complexType>
<xs:sequence>
<!-- Matrix used (-M) -->
<xs:element name="matrix" type="xs:string" minOccurs="0"/>
<!-- Expectation threshold (-e) -->
<xs:element name="expect" type="xs:double"/>
<!-- Inclusion threshold (-h) -->
<xs:element name="include" type="xs:double" minOccurs="0"/>
<!-- match score for NT (-r) -->
<xs:element name="sc-match" type="xs:integer" minOccurs="0"/>
<!-- mismatch score for NT (-q) -->
<xs:element name="sc-mismatch" type="xs:integer" minOccurs="0"/>
<!-- Gap opening cost (-G) -->
<xs:element name="gap-open" type="xs:integer" minOccurs="0"/>
<!-- Gap extension cost (-E) -->
<xs:element name="gap-extend" type="xs:integer" minOccurs="0"/>
<!-- Filtering options (-F) -->
<xs:element name="filter" type="xs:string" minOccurs="0"/>
<!-- PHI-BLAST pattern -->
<xs:element name="pattern" type="xs:string" minOccurs="0"/>
<!-- Limit of request to Entrez query -->
<xs:element name="entrez-query" type="xs:string" minOccurs="0"/>
<!--
composition-based stats (numbers correspond to
numbering in stand-alone application parameter -comp_based_stats).
-->
<xs:element name="cbs" type="xs:integer" minOccurs="0"/>
<!-- genetic code for query (blastx or tblastx) -->
<xs:element name="query-gencode" type="xs:integer" minOccurs="0"/>
<!-- genetic code for db or subjects (tblastn or tblastx) -->
<xs:element name="db-gencode" type="xs:integer" minOccurs="0"/>
<!-- bl2seq mode -->
<xs:element name="bl2seq-mode" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- Used to specify start/stop of masking on query. -->
<xs:element name="Range">
<xs:complexType>
<xs:sequence>
<!-- Beginning of masked range (one-offset) -->
<xs:element name="from" type="xs:integer"/>
<!-- End of masked range (one-offset) -->
<xs:element name="to" type="xs:integer"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Statistics">
<xs:complexType>
<xs:sequence>
<!-- Number of sequences in BLAST db -->
<xs:element name="db-num" type="xs:long" minOccurs="0"/>
<!-- Length of BLAST db -->
<xs:element name="db-len" type="xs:long" minOccurs="0"/>
<!-- Effective HSP length -->
<xs:element name="hsp-len" type="xs:integer"/>
<!-- Effective search space -->
<xs:element name="eff-space" type="xs:long"/>
<!-- Karlin-Altschul parameter K -->
<xs:element name="kappa" type="xs:double"/>
<!-- Karlin-Altschul parameter Lambda -->
<xs:element name="lambda" type="xs:double"/>
<!-- Karlin-Altschul parameter H -->
<xs:element name="entropy" type="xs:double"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- Description of entries for this (possibly non-redundant) sequence. -->
<xs:element name="HitDescr">
<xs:complexType>
<xs:sequence>
<!-- SeqId of subject -->
<xs:element name="id" type="xs:string"/>
<!-- accession -->
<xs:element name="accession" type="xs:string" minOccurs="0"/>
<!-- title (definition line) of subject -->
<xs:element name="title" type="xs:string" minOccurs="0"/>
<!-- NCBI taxid (9606 for human) -->
<xs:element name="taxid" type="xs:integer" minOccurs="0"/>
<!-- binomial scientific name ("Homo sapiens" for human). -->
<xs:element name="sciname" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Hit">
<xs:complexType>
<xs:sequence>
<!-- hit number -->
<xs:element name="num" type="xs:integer"/>
<!-- ID, title, and taxonomy for each entry in the PIG -->
<xs:element name="description">
<xs:complexType>
<xs:sequence minOccurs="0" maxOccurs="unbounded">
<xs:element ref="HitDescr"/>
</xs:sequence>
</xs:complexType>
</xs:element>
<!-- length of subject -->
<xs:element name="len" type="xs:integer"/>
<!-- all HSP regions for the given subject -->
<xs:element name="hsps" minOccurs="0">
<xs:complexType>
<xs:sequence minOccurs="0" maxOccurs="unbounded">
<xs:element ref="Hsp"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:sequence>
</xs:complexType>
</xs:element>
<xs:element name="Hsp">
<xs:complexType>
<xs:sequence>
<!-- HSP number -->
<xs:element name="num" type="xs:integer"/>
<!-- score (in bits) of HSP -->
<xs:element name="bit-score" type="xs:double"/>
<!-- score of HSP -->
<xs:element name="score" type="xs:double"/>
<!-- e-value of HSP -->
<xs:element name="evalue" type="xs:double"/>
<!-- number of identities in HSP -->
<xs:element name="identity" type="xs:integer" minOccurs="0"/>
<!-- number of positives in HSP -->
<xs:element name="positive" type="xs:integer" minOccurs="0"/>
<!-- score density -->
<xs:element name="density" type="xs:integer" minOccurs="0"/>
<!-- start of PHI-BLAST pattern -->
<xs:element name="pattern-from" type="xs:integer" minOccurs="0"/>
<!-- end of PHI-BLAST pattern -->
<xs:element name="pattern-to" type="xs:integer" minOccurs="0"/>
<!-- start of HSP in query -->
<xs:element name="query-from" type="xs:integer"/>
<!-- end of HSP -->
<xs:element name="query-to" type="xs:integer"/>
<!-- Strand of query (blastn) -->
<xs:element name="query-strand" type="xs:string" minOccurs="0"/>
<!-- translation frame of query (blastx, tblastx) -->
<xs:element name="query-frame" type="xs:integer" minOccurs="0"/>
<!-- start of HSP in subject -->
<xs:element name="hit-from" type="xs:integer"/>
<!-- end of HSP in subject -->
<xs:element name="hit-to" type="xs:integer"/>
<!-- Strand of subject (blastn) -->
<xs:element name="hit-strand" type="xs:string" minOccurs="0"/>
<!-- translation frame of subject (tblastn, tblastx) -->
<xs:element name="hit-frame" type="xs:integer" minOccurs="0"/>
<!-- length of the alignment used -->
<xs:element name="align-len" type="xs:integer" minOccurs="0"/>
<!-- number of gaps in HSP -->
<xs:element name="gaps" type="xs:integer" minOccurs="0"/>
<!-- alignment string for the query (with gaps) -->
<xs:element name="qseq" type="xs:string"/>
<!-- alignment string for subject (with gaps) -->
<xs:element name="hseq" type="xs:string"/>
<!-- formating middle line -->
<xs:element name="midline" type="xs:string" minOccurs="0"/>
</xs:sequence>
</xs:complexType>
</xs:element>
</xs:schema>
|
