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Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Biopython
Upstream-Contact: https://github.com/biopython/biopython/issues
Biopython discussion list <biopython@lists.open-bio.org>
(subscription required -> thus GitHub is preferred)
Peter Cock <p.j.a.cock@googlemail.com>
Source: http://biopython.org/DIST/
Files-Excluded: Bio/Entrez/DTDs/mathml2-qname-1.mod .gitattributes
Files: *
Copyright: © 1999-2024 Biopython contributors
License: other
Permission to use, copy, modify, and distribute this software and its
documentation with or without modifications and for any purpose and
without fee is hereby granted, provided that any copyright notices
appear in all copies and that both those copyright notices and this
permission notice appear in supporting documentation, and that the
names of the contributors or copyright holders not be used in
advertising or publicity pertaining to distribution of the software
without specific prior permission.
.
THE CONTRIBUTORS AND COPYRIGHT HOLDERS OF THIS SOFTWARE DISCLAIM ALL
WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL THE
CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY SPECIAL, INDIRECT
OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS
OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE
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OR PERFORMANCE OF THIS SOFTWARE.
Files: debian/*
Copyright: © 2009 Charles Plessy <plessy@debian.org>
2004-2009 Philipp Benner <philipp@debian.org>
2020-2024 Étienne Mollier <emollier@debian.org>
License: GPL-2+
The Debian packaging information is under the GPL, version 2 or later.
.
On Debian GNU/Linux systems, the complete text of the GNU General
Public License can be found in `/usr/share/common-licenses/GPL-2'.
Files: debian/tests/mini-ccd.cif
Copyright: © 2012, Maarten L. Hekkelman <m.hekkelman@cmbi.ru.nl>,
© 2020 NKI/AVL, Netherlands Cancer Institute
License: BSD-2-Clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
.
1. Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
Comment:
The file is a subset of components.cif. components.cif is the Chemical
Component Dictionary (CCD) which originates from the worldwide Protein
Data Bank (PDB)[1]. The subset mini-ccd.cif was collated by Maarten L.
Hekkelman initially for their work on the density-fitness package[2].
.
[1]: https://www.wwpdb.org/data/ccd
[2]: https://sources.debian.org/src/density-fitness/1.0.12-2/debian/tests/mini-ccd.cif/
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