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BLAST TEST DATA FILES
=====================
This directory contains various data files for testing the
BLAST-related code in Biopython. All files are grouped by BLAST
release version, from the most recent first.
BLAST 2.2.28+
-------------
tab_2228_tblastn_001 single query, custom columns: evalue sallseqid qseqid, commented
tab_2228_tblastx_001 single query with all columns (including new ones added in this version), commented
BLAST 2.2.26+
-------------
tab_2226_tblastn_001 multiple queries
tab_2226_tblastn_002 single query, no hits
tab_2226_tblastn_003 single query, hits @ single hsp
tab_2226_tblastn_004 single query, multiple hsps per hit present
tab_2226_tblastn_005 multiple queries, commented
tab_2226_tblastn_006 single query, no hits, commented
tab_2226_tblastn_007 single query, hits @ single hsp, commented
tab_2226_tblastn_008 single query, multiple hsps per hit present, commented
tab_2226_tblastn_009 multiple queries with custom columns
tab_2226_tblastn_010 multiple queries with custom columns, commented
tab_2226_tblastn_011 multiple queries with all columns, commented
tab_2226_tblastn_012 multiple quries, remote search, standard columns, commented
tab_2226_tblastn_013 single query, custom columns: qsseq std sseq
xml_2226_blastn_001.xml multiple queries
xml_2226_blastn_002.xml single query, no hits
xml_2226_blastn_003.xml single query, hits @ single hsp
xml_2226_blastn_004.xml single query, multiple hsps per hit present
xml_2226_blastn_005.xml multiple queries, remote search on NCBI's database
xml_2226_blastn_006.xml single query, against a database with duplicate entries
xml_2226_blastp_001.xml multiple queries
xml_2226_blastp_002.xml single query, no hits
xml_2226_blastp_003.xml single query, hits @ single hsp
xml_2226_blastp_004.xml single query, multiple hsps per hit present
xml_2226_blastp_005.xml multiple queries, remote search on NCBI's database
xml_2226_blastx_001.xml multiple queries
xml_2226_blastx_002.xml single query, no hits
xml_2226_blastx_003.xml single query, multiple hsps per hit present
xml_2226_blastx_004.xml multiple queries, remote search on NCBI's database
xml_2226_tblastn_001.xml multiple queries
xml_2226_tblastn_002.xml single query, no hits
xml_2226_tblastn_003.xml single query, hits @ single hsp
xml_2226_tblastn_004.xml single query, multiple hsps per hit present
xml_2226_tblastn_005.xml multiple queries, remote search on NCBI's database
xml_2226_tblastx_001.xml multiple queries
xml_2226_tblastx_002.xml single query, no hits
xml_2226_tblastx_003.xml single query, multiple hsps per hit present
xml_2226_tblastx_004.xml multiple queries, remote search on NCBI's database
BLAST 2.2.22+
-------------
xml_2222_blastp_001.xml n/a
xml_2222_blastx_001.xml multiple queries
BLAST 2.2.18+
-------------
xml_2218_blastp_001.xml n/a
xml_2218_blastp_002.xml n/a
BLAST 2.2.18 (Legacy)
---------------------
xml_2218L_blastp_001.xml n/a
xml_2218L_rpsblast_001.xml n/a
BLAST 2.2.12 (Legacy)
---------------------
xml_2212L_blastn_001.xml n/a
xml_2212L_blastp_001.xml n/a
xml_2212L_blastx_001.xml n/a
xml_2212L_tblastn_001.xml n/a
xml_2212L_tblastx_001.xml n/a
Mock files for mocked qblast searches
-------------------------------------
This are minimal xml/html files mimicking NCBI qblast responses
for our mocked online tests in test_NCBI_qlast_mock.py:
mock_actin.xml
mock_disco.xml
mock_orchid.xml
mock_pcr.xml
mock_short_empty.xml
mock_short_result.xml
mock_wait.html
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