File: xml_21500_psiblast_001.xml

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<?xml version="1.0"?>
<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
<BlastOutput>
  <BlastOutput_program>psiblast</BlastOutput_program>
  <BlastOutput_version>PSIBLAST 2.15.0+</BlastOutput_version>
  <BlastOutput_reference>Alejandro A. Sch&amp;auml;ffer, L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), &quot;Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements&quot;, Nucleic Acids Res. 29:2994-3005.</BlastOutput_reference>
  <BlastOutput_db>swissprot</BlastOutput_db>
  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
  <BlastOutput_query-def>WP_001234791.1 Sec-independent protein translocase subunit TatA [Shigella flexneri]</BlastOutput_query-def>
  <BlastOutput_query-len>103</BlastOutput_query-len>
  <BlastOutput_param>
    <Parameters>
      <Parameters_matrix>BLOSUM62</Parameters_matrix>
      <Parameters_expect>1e-30</Parameters_expect>
      <Parameters_gap-open>11</Parameters_gap-open>
      <Parameters_gap-extend>1</Parameters_gap-extend>
      <Parameters_filter>F</Parameters_filter>
    </Parameters>
  </BlastOutput_param>
<BlastOutput_iterations>
<Iteration>
  <Iteration_iter-num>1</Iteration_iter-num>
  <Iteration_query-ID>Query_1</Iteration_query-ID>
  <Iteration_query-def>WP_001234791.1 Sec-independent protein translocase subunit TatA [Shigella flexneri]</Iteration_query-def>
  <Iteration_query-len>103</Iteration_query-len>
<Iteration_hits>
<Hit>
  <Hit_num>1</Hit_num>
  <Hit_id>sp|P69428.1|</Hit_id>
  <Hit_def>RecName: Full=Sec-independent protein translocase protein TatA [Escherichia coli K-12] &gt;sp|P69429.1| RecName: Full=Sec-independent protein translocase protein TatA [Escherichia coli CFT073] &gt;sp|P69430.1| RecName: Full=Sec-independent protein translocase protein TatA [Escherichia coli O157:H7] &gt;sp|P69431.1| RecName: Full=Sec-independent protein translocase protein TatA [Shigella flexneri]</Hit_def>
  <Hit_accession>P69428</Hit_accession>
  <Hit_len>89</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>177.178</Hsp_bit-score>
      <Hsp_score>448</Hsp_score>
      <Hsp_evalue>2.3039e-58</Hsp_evalue>
      <Hsp_query-from>15</Hsp_query-from>
      <Hsp_query-to>103</Hsp_query-to>
      <Hsp_hit-from>1</Hsp_hit-from>
      <Hsp_hit-to>89</Hsp_hit-to>
      <Hsp_query-frame>0</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>89</Hsp_identity>
      <Hsp_positive>89</Hsp_positive>
      <Hsp_gaps>0</Hsp_gaps>
      <Hsp_align-len>89</Hsp_align-len>
      <Hsp_qseq>MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV</Hsp_qseq>
      <Hsp_hseq>MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV</Hsp_hseq>
      <Hsp_midline>MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
<Hit>
  <Hit_num>2</Hit_num>
  <Hit_id>sp|P0A2H3.1|</Hit_id>
  <Hit_def>RecName: Full=Sec-independent protein translocase protein TatA [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] &gt;sp|P0A2H4.1| RecName: Full=Sec-independent protein translocase protein TatA [Salmonella enterica subsp. enterica serovar Typhi]</Hit_def>
  <Hit_accession>P0A2H3</Hit_accession>
  <Hit_len>84</Hit_len>
  <Hit_hsps>
    <Hsp>
      <Hsp_num>1</Hsp_num>
      <Hsp_bit-score>142.51</Hsp_bit-score>
      <Hsp_score>358</Hsp_score>
      <Hsp_evalue>1.0691e-44</Hsp_evalue>
      <Hsp_query-from>15</Hsp_query-from>
      <Hsp_query-to>103</Hsp_query-to>
      <Hsp_hit-from>1</Hsp_hit-from>
      <Hsp_hit-to>84</Hsp_hit-to>
      <Hsp_query-frame>0</Hsp_query-frame>
      <Hsp_hit-frame>0</Hsp_hit-frame>
      <Hsp_identity>75</Hsp_identity>
      <Hsp_positive>79</Hsp_positive>
      <Hsp_gaps>5</Hsp_gaps>
      <Hsp_align-len>89</Hsp_align-len>
      <Hsp_qseq>MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV</Hsp_qseq>
      <Hsp_hseq>MGGISIWQLLIVAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDDAKQDKTSQDADFTAKSIADKQG-----EAKKEDAKSQDKEQV</Hsp_hseq>
      <Hsp_midline>MGGISIWQLLI+AVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDD+ KQDKTSQDADFTAK+IADKQ      +AK EDAK  DKEQV</Hsp_midline>
    </Hsp>
  </Hit_hsps>
</Hit>
</Iteration_hits>
  <Iteration_stat>
    <Statistics>
      <Statistics_db-num>482816</Statistics_db-num>
      <Statistics_db-len>183558113</Statistics_db-len>
      <Statistics_hsp-len>72</Statistics_hsp-len>
      <Statistics_eff-space>4627826878</Statistics_eff-space>
      <Statistics_kappa>0.041</Statistics_kappa>
      <Statistics_lambda>0.267</Statistics_lambda>
      <Statistics_entropy>0.14</Statistics_entropy>
    </Statistics>
  </Iteration_stat>
</Iteration>
</BlastOutput_iterations>
</BlastOutput>