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[metadata]
name = bioregistry
version = 0.11.12
description = Integrated registry of biological databases and nomenclatures
long_description = file: README.md
long_description_content_type = text/markdown
url = https://github.com/biopragmatics/bioregistry
download_url = https://github.com/biopragmatics/bioregistry/releases
project_urls =
Bug Tracker = https://github.com/biopragmatics/bioregistry/issues
author = Charles Tapley Hoyt
author_email = cthoyt@gmail.com
maintainer = Charles Tapley Hoyt
maintainer_email = cthoyt@gmail.com
license = MIT
license_files =
LICENSE
classifiers =
Development Status :: 4 - Beta
Environment :: Console
License :: OSI Approved :: MIT License
Operating System :: OS Independent
Programming Language :: Python
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: 3.12
Programming Language :: Python :: 3 :: Only
keywords =
databases
biological databases
biomedical databases
[options]
install_requires =
requests
tqdm
pystow>=0.1.13
click
pydantic
curies>=0.7.0
zip_safe = false
include_package_data = True
python_requires = >=3.8
packages = find:
package_dir =
= src
[options.packages.find]
where = src
[options.extras_require]
tests =
coverage
pytest
more_itertools
httpx
docs =
sphinx<7.3
sphinx-rtd-theme
sphinx-click
sphinx_automodapi
autodoc_pydantic
gha =
more_itertools
align =
pyyaml
beautifulsoup4
tabulate
defusedxml
class-resolver
fairsharing-client>=0.1.0
pandas
export =
pyyaml
rdflib
rdflib-jsonld
ndex2
charts =
matplotlib
matplotlib_venn
seaborn
pandas
jinja2
health =
click_default_group
pandas
tabulate
pyyaml
jinja2
web =
pyyaml
rdflib
rdflib-jsonld
rdflib-endpoint
flask<2.2.4
werkzeug<2.3.0
fastapi
uvicorn
bootstrap-flask<=2.0.0
markdown
curies[fastapi]
[options.entry_points]
console_scripts =
bioregistry = bioregistry.cli:main
[doc8]
max-line-length = 120
[coverage:run]
branch = True
source = bioregistry
omit =
tests/*
docs/*
src/bioregistry/cli.py
src/bioregistry/__main__.py
[coverage:paths]
source =
src/bioregistry
.tox/*/lib/python*/site-packages/bioregistry
[coverage:report]
show_missing = True
exclude_lines =
def __str__
def __repr__
[darglint]
docstring_style = sphinx
strictness = short
[mypy]
plugins = pydantic.mypy
[flake8]
ignore =
E203
W503
B028
exclude =
.tox,
.git,
__pycache__,
docs/source/conf.py,
build,
dist,
tests/fixtures/*,
*.pyc,
*.egg-info,
.cache,
.eggs,
data
per-file-ignores =
src/bioregistry/app/api.py:B008
max-line-length = 120
max-complexity = 20
import-order-style = pycharm
application-import-names =
bioregistry
tests
[egg_info]
tag_build =
tag_date = 0
|
