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"""Test utilities."""
import unittest
from bioregistry.utils import backfill, deduplicate
class TestDeduplicate(unittest.TestCase):
"""Test deduplication workflow."""
def test_backfill(self):
"""Test record backfill."""
records = [
{"pubmed": "pmid_1"},
{"arxiv": "arxiv_1", "doi": "doi_1"},
{"doi": "doi_1", "pubmed": "pmid_1", "title": "yup"},
{"pubmed": "pmid_1"},
]
res = backfill(records, keys=["pubmed", "doi", "pmc", "arxiv"])
self.assertEqual(
[
{
"arxiv": "arxiv_1",
"doi": "doi_1",
"pubmed": "pmid_1",
},
{
"arxiv": "arxiv_1",
"doi": "doi_1",
"pubmed": "pmid_1",
},
{
"arxiv": "arxiv_1",
"doi": "doi_1",
"pubmed": "pmid_1",
"title": "yup",
},
{
"arxiv": "arxiv_1",
"doi": "doi_1",
"pubmed": "pmid_1",
},
],
res,
)
def test_deduplicate(self):
"""Test record deduplication."""
records = [
{"arxiv": "arxiv_1", "doi": "doi_1"},
{"doi": "doi_1", "pubmed": "pmid_1", "title": "yup"},
{"pubmed": "pmid_1", "pmc": "pmc_1"},
{"pubmed": "pmid_1"},
]
res = deduplicate(records, keys=["pubmed", "doi", "pmc", "arxiv"])
self.assertEqual(
[
{
"arxiv": "arxiv_1",
"doi": "doi_1",
"pubmed": "pmid_1",
"title": "yup",
"pmc": "pmc_1",
},
],
res,
)
|
