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Source: python-biotools
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>
Section: python
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 12),
dh-python,
python3-all
Standards-Version: 4.4.1
Vcs-Browser: https://salsa.debian.org/med-team/python-biotools
Vcs-Git: https://salsa.debian.org/med-team/python-biotools.git
Homepage: https://github.com/sonwell/biotools
Package: python3-biotools
Architecture: all
Depends: ${python3:Depends},
${misc:Depends},
python3-numpy,
python3-matplotlib,
clustalw,
ncbi-blast+ | ncbi-blast+-legacy
Description: Python3 bioinformatics utilities for high-throughput genomic sequencing
This package contains utilities like
biotools.align - align sequences (hybrid between Needleman-Wunsch and
Smith-Waterman which is used to find the subsequence
within a larger sequence that best aligns to a reference)
biotools.annotation - create annotation files. The annotations can be used
to create a hierarchy among the annotations
biotools.BLAST - manage BLAST databases and interface with the BLAST+
standalone program available from NCBI.
biotools.clustal - interface to clustalw global (multiple nucleotide or
peptide sequence alignment)
biotools.complement - creates the complement of a sequence, which can then be
reversed
biotools.sequence - various tools to deal with sequences
biotools.translate - translate a nucleotide using the standard genetic code
.
This package contains the Python3 module.
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