File: maf_extract_ranges_tests.py

package info (click to toggle)
python-bx 0.13.0-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 5,000 kB
  • sloc: python: 17,136; ansic: 2,326; makefile: 24; sh: 8
file content (17 lines) | stat: -rw-r--r-- 772 bytes parent folder | download | duplicates (2)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
import unittest

import base


class Test(base.BaseScriptTest, unittest.TestCase):
    command_line = "./scripts/maf_extract_ranges.py ${inverval_file} 0"
    input_inverval_file = base.TestFile("80082367 80083066")
    input_stdin = base.TestFile(filename="./test_data/maf_tests/mm8_chr7_tiny_no_index.maf")
    output_stdout = base.TestFile(filename="./test_data/maf_tests/dcking_ghp074.maf")


class TestElines(base.BaseScriptTest, unittest.TestCase):
    command_line = "./scripts/maf_extract_ranges.py ${inverval_file} 0 -m 5"
    input_inverval_file = base.TestFile("56694985 56695040")
    input_stdin = base.TestFile(filename="./test_data/maf_tests/mm10_chr12_lessspe.maf")
    output_stdout = base.TestFile(filename="./test_data/maf_tests/mm10_chr12_slice2.maf")