File: out_to_chain_tests.py

package info (click to toggle)
python-bx 0.13.0-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 5,000 kB
  • sloc: python: 17,136; ansic: 2,326; makefile: 24; sh: 8
file content (12 lines) | stat: -rw-r--r-- 429 bytes parent folder | download | duplicates (3)
1
2
3
4
5
6
7
8
9
10
11
12
import unittest

import base


class Test(base.BaseScriptTest, unittest.TestCase):
    command_line = "./scripts/out_to_chain.py ./test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.out --chrsizes ./test_data/epo_tests/hg19.chrom.sizes ./test_data/epo_tests/mm9.chrom.sizes"
    output_stdout = base.TestFile(filename="./test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain")


if __name__ == "__main__":
    unittest.main()