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python-bx 0.13.0-1
  • links: PTS, VCS
  • area: main
  • in suites: forky, sid, trixie
  • size: 5,000 kB
  • sloc: python: 17,136; ansic: 2,326; makefile: 24; sh: 8

Folder: scripts

d .. (parent)
- - rwxr-xr-x 4,084 aggregate_scores_in_intervals.py
- - rwxr-xr-x 1,058 align_print_template.py
- - rwxr-xr-x 1,837 axt_extract_ranges.py
- - rwxr-xr-x 1,207 axt_to_fasta.py
- - rwxr-xr-x 4,279 axt_to_lav.py
- - rwxr-xr-x 4,152 axt_to_maf.py
- - rwxr-xr-x 1,040 bed_bigwig_profile.py
- - rwxr-xr-x 1,620 bed_build_windows.py
- - rwxr-xr-x 1,323 bed_complement.py
- - rwxr-xr-x 807 bed_count_by_interval.py
- - rwxr-xr-x 807 bed_count_overlapping.py
- - rwxr-xr-x 609 bed_coverage.py
- - rwxr-xr-x 1,317 bed_coverage_by_interval.py
- - rwxr-xr-x 1,048 bed_diff_basewise_summary.py
- - rwxr-xr-x 1,065 bed_extend_to.py
- - rwxr-xr-x 1,956 bed_intersect.py
- - rwxr-xr-x 956 bed_intersect_basewise.py
- - rwxr-xr-x 766 bed_merge_overlapping.py
- - rwxr-xr-x 5,619 bed_rand_intersect.py
- - rwxr-xr-x 1,014 bed_subtract_basewise.py
- - rwxr-xr-x 17,069 bnMapper.py
- - rwxr-xr-x 4,950 div_snp_table_chr.py
- - rwxr-xr-x 1,946 find_in_sorted_file.py
- - rwxr-xr-x 9,233 gene_fourfold_sites.py
- - rwxr-xr-x 1,552 get_scores_in_intervals.py
- - rwxr-xr-x 627 int_seqs_to_char_strings.py
- - rwxr-xr-x 1,078 interval_count_intersections.py
- - rwxr-xr-x 995 interval_join.py
- - rwxr-xr-x 1,253 lav_to_axt.py
- - rwxr-xr-x 1,203 lav_to_maf.py
- - rwxr-xr-x 648 line_select.py
- - rwxr-xr-x 2,837 lzop_build_offset_table.py
- - rw-r--r-- 5,149 mMK_bitset.py
- - rwxr-xr-x 2,747 maf_build_index.py
- - rwxr-xr-x 1,494 maf_chop.py
- - rwxr-xr-x 2,377 maf_chunk.py
- - rwxr-xr-x 933 maf_col_counts.py
- - rwxr-xr-x 1,561 maf_col_counts_all.py
- - rwxr-xr-x 1,618 maf_count.py
- - rwxr-xr-x 1,453 maf_covered_ranges.py
- - rwxr-xr-x 1,808 maf_covered_regions.py
- - rwxr-xr-x 1,435 maf_div_sites.py
- - rwxr-xr-x 1,175 maf_drop_overlapping.py
- - rwxr-xr-x 2,733 maf_extract_chrom_ranges.py
- - rwxr-xr-x 2,211 maf_extract_ranges.py
- - rwxr-xr-x 4,633 maf_extract_ranges_indexed.py
- - rwxr-xr-x 1,567 maf_filter.py
- - rwxr-xr-x 808 maf_filter_max_wc.py
- - rwxr-xr-x 410 maf_gap_frequency.py
- - rwxr-xr-x 585 maf_gc_content.py
- - rwxr-xr-x 3,858 maf_interval_alignibility.py
- - rwxr-xr-x 861 maf_limit_to_species.py
- - rwxr-xr-x 1,662 maf_mapping_word_frequency.py
- - rw-r--r-- 1,104 maf_mask_cpg.py
- - rwxr-xr-x 713 maf_mean_length_ungapped_piece.py
- - rwxr-xr-x 642 maf_percent_columns_matching.py
- - rwxr-xr-x 797 maf_percent_identity.py
- - rwxr-xr-x 784 maf_print_chroms.py
- - rwxr-xr-x 1,542 maf_print_scores.py
- - rwxr-xr-x 690 maf_randomize.py
- - rwxr-xr-x 1,833 maf_region_coverage_by_src.py
- - rwxr-xr-x 723 maf_select.py
- - rwxr-xr-x 587 maf_shuffle_columns.py
- - rwxr-xr-x 563 maf_species_in_all_files.py
- - rwxr-xr-x 1,582 maf_split_by_src.py
- - rwxr-xr-x 1,509 maf_thread_for_species.py
- - rwxr-xr-x 4,298 maf_tile.py
- - rwxr-xr-x 11,428 maf_tile_2.py
- - rwxr-xr-x 11,182 maf_tile_2bit.py
- - rwxr-xr-x 2,735 maf_to_axt.py
- - rwxr-xr-x 1,735 maf_to_concat_fasta.py
- - rwxr-xr-x 809 maf_to_fasta.py
- - rwxr-xr-x 974 maf_to_int_seqs.py
- - rwxr-xr-x 714 maf_translate_chars.py
- - rwxr-xr-x 761 maf_truncate.py
- - rwxr-xr-x 965 maf_word_frequency.py
- - rw-r--r-- 2,930 mask_quality.py
- - rwxr-xr-x 1,043 nib_chrom_intervals_to_fasta.py
- - rwxr-xr-x 812 nib_intervals_to_fasta.py
- - rwxr-xr-x 216 nib_length.py
- - rwxr-xr-x 232 one_field_per_line.py
- - rwxr-xr-x 2,526 out_to_chain.py
- - rwxr-xr-x 158 prefix_lines.py
- - rwxr-xr-x 929 pretty_table.py
- - rw-r--r-- 2,092 qv_to_bqv.py
- - rwxr-xr-x 299 random_lines.py
- - rwxr-xr-x 1,207 table_add_column.py
- - rwxr-xr-x 2,217 table_filter.py
- - rwxr-xr-x 636 tfloc_summary.py
- - rwxr-xr-x 3,598 ucsc_gene_table_to_intervals.py
- - rwxr-xr-x 784 wiggle_to_array_tree.py
- - rwxr-xr-x 1,289 wiggle_to_binned_array.py
- - rwxr-xr-x 736 wiggle_to_chr_binned_array.py
- - rwxr-xr-x 512 wiggle_to_simple.py