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##maf version=1
a score=-22139.000000
s mm10.chr12 56694975 11 + 120129022 GTCCTGTG---CTC--
s hetGla2.JH602151 6912237 8 - 7060556 GTT---TG---CGC--
i hetGla2.JH602151 C 0 C 0
s micMur1.scaffold_1897 109306 8 + 248211 TTG---TG---CGC--
i micMur1.scaffold_1897 C 0 I 1
s tupBel1.scaffold_149545.1-136892 2298 8 + 136892 CCG---TG---CGC--
i tupBel1.scaffold_149545.1-136892 C 0 I 1
s pteVam1.scaffold_182 42249 8 + 455609 CTG---TG---CGC--
i pteVam1.scaffold_182 C 0 I 1
s eriEur1.scaffold_370206 11234 8 + 65867 CTG---AA---AAT--
i eriEur1.scaffold_370206 C 0 I 1
s sorAra1.scaffold_233549 569 11 + 65803 CTT---GGTGCACT--
i sorAra1.scaffold_233549 C 0 I 1
s loxAfr3.scaffold_9 12283154 10 + 83325590 CGG---TG---CGATC
i loxAfr3.scaffold_9 C 0 C 0
e bosTau7.chr21 47705583 182 + 69078422 I
a score=-247111.000000
s mm10.chr12 56694986 40 + 120129022 CTCTTTAG---TCTGG--------TTTTTTAATTTTTTTTTCC-T------CA-----CTGCA
s hetGla2.JH602151 6912245 40 - 7060556 AATTTCAGCCCCCCCG--------ATGCCTAGGTTTCC---CC-G------CA-----CTGGA
i hetGla2.JH602151 C 0 C 0
s micMur1.scaffold_1897 109315 37 + 248211 CGCTTCAG--CTGCAC--------GTGTTTAAATTCCC---GGCA------CA-----TGG--
i micMur1.scaffold_1897 I 1 C 0
s tupBel1.scaffold_149545.1-136892 2307 42 + 136892 AGCTTTCG--CTGCGT--------GTGGTTACTTTCTC---CGCA------CACCGCGCAG--
i tupBel1.scaffold_149545.1-136892 I 1 C 0
s pteVam1.scaffold_182 42258 37 + 455609 AGCTTTAG--CTGCAA--------GTGGTTACATTCTC---TGCA------CA-----CCT--
i pteVam1.scaffold_182 I 1 I 2
s eriEur1.scaffold_370206 11243 36 + 65867 ACTTTAAG--TAACTTAAAGAAACTCGGCTACACACTC-------------------------
i eriEur1.scaffold_370206 I 1 I 2
s sorAra1.scaffold_233549 581 38 + 65803 GCTTTTAG--CCACTCAAGG----TCGGTTATGTCCAC---TGCA------CA----------
i sorAra1.scaffold_233549 I 1 I 2
s loxAfr3.scaffold_9 12283164 24 + 83325590 ------------GCTT--------GTAGTTAAGTTCTC---GGTA------CA----------
i loxAfr3.scaffold_9 C 0 C 0
e bosTau7.chr21 47705583 182 + 69078422 I
a score=18354.000000
s mm10.chr12 56695026 1 + 120129022 C
s hetGla2.JH602151 6912285 1 - 7060556 T
i hetGla2.JH602151 C 0 C 0
s micMur1.scaffold_1897 109352 1 + 248211 C
i micMur1.scaffold_1897 C 0 C 0
s tupBel1.scaffold_149545.1-136892 2349 1 + 136892 C
i tupBel1.scaffold_149545.1-136892 C 0 C 0
s pteVam1.scaffold_182 42297 1 + 455609 C
i pteVam1.scaffold_182 I 2 C 0
s eriEur1.scaffold_370206 11281 1 + 65867 C
i eriEur1.scaffold_370206 I 2 C 0
s sorAra1.scaffold_233549 621 1 + 65803 C
i sorAra1.scaffold_233549 I 2 C 0
e bosTau7.chr21 47705583 182 + 69078422 I
e loxAfr3.scaffold_9 12283188 0 + 83325590 C
a score=36657.000000
s mm10.chr12 56695027 7 + 120129022 CTGGCCT
s hetGla2.JH602151 6912286 6 - 7060556 GCGGAC-
i hetGla2.JH602151 C 0 I 1
s micMur1.scaffold_1897 109353 7 + 248211 GTGACCC
i micMur1.scaffold_1897 C 0 C 0
s tupBel1.scaffold_149545.1-136892 2350 7 + 136892 GCGGCTA
i tupBel1.scaffold_149545.1-136892 C 0 C 0
s bosTau7.chr21 47705765 7 + 69078422 GGCCTCC
i bosTau7.chr21 I 182 C 0
s pteVam1.scaffold_182 42298 4 + 455609 --AG-CT
i pteVam1.scaffold_182 C 0 C 0
s eriEur1.scaffold_370206 11282 7 + 65867 TGAGCCC
i eriEur1.scaffold_370206 C 0 C 0
s sorAra1.scaffold_233549 622 7 + 65803 CCTGGCC
i sorAra1.scaffold_233549 C 0 C 0
e loxAfr3.scaffold_9 12283188 0 + 83325590 C
a score=99018.000000
s mm10.chr12 56695034 37 + 120129022 CTGCTAGGAT--------CC------------------------------------------------------------------------------------------------TGCTTGACTGA-GG--TTTAGCC-------------CCTC------------------A
s hetGla2.JH602151 6912293 37 - 7060556 TTGCCTGGAC--------CT------------------------------------------------------------------------------------------------CGCGTAGCCAG-GG--ATTGGTC-------------CTGC------------------G
i hetGla2.JH602151 I 1 C 0
s micMur1.scaffold_1897 109360 57 + 248211 CTGCCTC-AGCCTGCAAACC------------------------------------------------------------------------------------------------TGCGCGGCTTA-GT--GTTGGCCCGCGCTCCCAGACGAGC------------------C
i micMur1.scaffold_1897 C 0 C 0
s tupBel1.scaffold_149545.1-136892 2357 33 + 136892 CTGCCTCGAG--------CC------------------------------------------------------------------------------------------------TGCTCGACTAA-GG--GTTGACC-----------------------------------C
i tupBel1.scaffold_149545.1-136892 C 0 C 0
s bosTau7.chr21 47705772 33 + 69078422 ATCTCTGGCT--------CC------------------------------------------------------------------------------------------------T-----GCTCg-tg--tttagtc-------------gctc-----------------ag
i bosTau7.chr21 C 0 C 0
s pteVam1.scaffold_182 42302 133 + 455609 CTGCCTGGAG--------CCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCACTAA-GG--TTTGTCC-------------CCGC------------------G
i pteVam1.scaffold_182 C 0 C 0
s eriEur1.scaffold_370206 11289 37 + 65867 CTGCCTGGAC--------CG------------------------------------------------------------------------------------------------TGAGCTGCTGG-GG--TTTGGGC-------------CTGA------------------G
i eriEur1.scaffold_370206 C 0 C 0
s sorAra1.scaffold_233549 629 36 + 65803 CTGCTGGGAG--------CC------------------------------------------------------------------------------------------------CAAGGGGCTAT-GG--TTT-GAC-------------CCGA------------------G
i sorAra1.scaffold_233549 C 0 C 0
s loxAfr3.scaffold_9 12283188 30 + 83325590 ------TTAG--------CC------------------------------------------------------------------------------------------------TGCTTGGCGAG-GG--TTCGCCC--------------TGA------------------G
i loxAfr3.scaffold_9 C 0 C 0
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