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##maf version=1
a score=-247111.0
s mm10.chr12 56694986 40 + 120129022 CTCTTTAG---TCTGG--------TTTTTTAATTTTTTTTTCC-T------CA-----CTGCA
s hetGla2.JH602151 6912245 40 - 7060556 AATTTCAGCCCCCCCG--------ATGCCTAGGTTTCC---CC-G------CA-----CTGGA
i hetGla2.JH602151 C 0 C 0
s micMur1.scaffold_1897 109315 37 + 248211 CGCTTCAG--CTGCAC--------GTGTTTAAATTCCC---GGCA------CA-----TGG--
i micMur1.scaffold_1897 I 1 C 0
s tupBel1.scaffold_149545.1-136892 2307 42 + 136892 AGCTTTCG--CTGCGT--------GTGGTTACTTTCTC---CGCA------CACCGCGCAG--
i tupBel1.scaffold_149545.1-136892 I 1 C 0
s pteVam1.scaffold_182 42258 37 + 455609 AGCTTTAG--CTGCAA--------GTGGTTACATTCTC---TGCA------CA-----CCT--
i pteVam1.scaffold_182 I 1 I 2
s eriEur1.scaffold_370206 11243 36 + 65867 ACTTTAAG--TAACTTAAAGAAACTCGGCTACACACTC-------------------------
i eriEur1.scaffold_370206 I 1 I 2
s sorAra1.scaffold_233549 581 38 + 65803 GCTTTTAG--CCACTCAAGG----TCGGTTATGTCCAC---TGCA------CA----------
i sorAra1.scaffold_233549 I 1 I 2
s loxAfr3.scaffold_9 12283164 24 + 83325590 ------------GCTT--------GTAGTTAAGTTCTC---GGTA------CA----------
i loxAfr3.scaffold_9 C 0 C 0
e bosTau7.chr21 47705583 182 + 69078422 I
a score=36657.0
s mm10.chr12 56695027 7 + 120129022 CTGGCCT
s hetGla2.JH602151 6912286 6 - 7060556 GCGGAC-
i hetGla2.JH602151 C 0 I 1
s micMur1.scaffold_1897 109353 7 + 248211 GTGACCC
i micMur1.scaffold_1897 C 0 C 0
s tupBel1.scaffold_149545.1-136892 2350 7 + 136892 GCGGCTA
i tupBel1.scaffold_149545.1-136892 C 0 C 0
s bosTau7.chr21 47705765 7 + 69078422 GGCCTCC
i bosTau7.chr21 I 182 C 0
s pteVam1.scaffold_182 42298 4 + 455609 --AG-CT
i pteVam1.scaffold_182 C 0 C 0
s eriEur1.scaffold_370206 11282 7 + 65867 TGAGCCC
i eriEur1.scaffold_370206 C 0 C 0
s sorAra1.scaffold_233549 622 7 + 65803 CCTGGCC
i sorAra1.scaffold_233549 C 0 C 0
e loxAfr3.scaffold_9 12283188 0 + 83325590 C
a score=99018.0
s mm10.chr12 56695034 6 + 120129022 CTGCTA
s hetGla2.JH602151 6912293 6 - 7060556 TTGCCT
s micMur1.scaffold_1897 109360 6 + 248211 CTGCCT
s tupBel1.scaffold_149545.1-136892 2357 6 + 136892 CTGCCT
s bosTau7.chr21 47705772 6 + 69078422 ATCTCT
s pteVam1.scaffold_182 42302 6 + 455609 CTGCCT
s eriEur1.scaffold_370206 11289 6 + 65867 CTGCCT
s sorAra1.scaffold_233549 629 6 + 65803 CTGCTG
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