1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
|
##maf version=1
a score=10542.0
s mm8.chr7 80082334 34 + 145134094 GGGCTGAGGGC--AGGGATGG---AGGGCGGTCC--------------CAGCA-
s rn4.chr1 136011785 34 + 267910886 GGGCTGAGGGC--AGGGACGG---AGGGCGGTCC--------------CAGCA-
s oryCun1.scaffold_199771 14021 43 - 75077 -----ATGGGC--AAGCGTGG---AGGGGAACCTCTCCTCCCCTCCGACAAAG-
s hg18.chr15 88557580 27 + 100338915 --------GGC--AAGTGTGGA--AGGGAAGCCC--------------CAGAA-
s panTro2.chr15 87959837 27 + 100063422 --------GGC--AAGTGTGGA--AGGGAAGCCC--------------CAGAA-
s rheMac2.chr7 69864714 28 + 169801366 -------GGGC--AAGTATGGA--AGGGAAGCCC--------------CAGAA-
s canFam2.chr3 56030570 39 + 94715083 AGGTTTAGGGCAGAGGGATGAAGGAGGAGAATCC--------------CTATG-
s dasNov1.scaffold_106893 7435 34 + 9831 GGAACGAGGGC--ATGTGTGG---AGGGGGCTGC--------------CCACA-
s loxAfr1.scaffold_8298 30264 38 + 78952 ATGATGAGGGG--AAGCGTGGAGGAGGGGAACCC--------------CTAGGA
s echTel1.scaffold_304651 594 37 - 10007 -TGCTATGGCT--TTGTGTCTAGGAGGGGAATCC--------------CCAGGA
a score=-33148.0
s mm8.chr7 80082368 103 + 145134094 TGAGAGGGCATGCT-GTGAAGGGACTGTGCT---CAGTTCAAGGCATAGTCCACTTCC--------CTTCCCTTGGTCATTCTGTTCGGTGTGTTTCCAGCAGATATGGAGAGT-------------------------------------C----
s rn4.chr1 136011819 86 + 267910886 TGAGAGGGCATGTT-ATGAAGGCACTGTGCT--------------------CACTTTC--------CATCCCATGGTCATTCTGTTGAGTGTGTTCCCAGCAGATACGGAAAGT-------------------------------------C----
s oryCun1.scaffold_199771 14064 74 - 75077 TAGGACTGCCTGGTGGGGGGGGCCCTGCACC--------------------TACTTCTGCAAGGCACGTCCCGCG----------TCTGTGCCTTCGCCGCA-----------T-------------------------------------C----
s hg18.chr15 88557607 128 + 100338915 GGGGAAAGCCTGGT-TAAGGGGCCCTTCACCCCCCTCTCCAAGGCACATTCCCCTTTC--------TGTCCCTTTGTCGTTTCATTCACTCTACTCCCAGCATGGCTGGAGGGC---TTGTGG---CTGGCTCGTTTGG---------AGGC----
s panTro2.chr15 87959864 116 + 100063422 GGGGAAAGCCTGGT-TAAGGGGCCCTTCACCCCCCTCTCCAAGGCACATTCCCCTTTC--------TGTCCCTTTGTCGTTTCATTCACTA------------GGCTAGAGGGC---TTGTGG---CTGGCTCGTTTGG---------AGGC----
s rheMac2.chr7 69864742 107 + 169801366 GGAGAAAGCCTGGT-TAAGGGGCCCTTCA-----CTCTCCAAGGCACATTCCACTTTC--------TGTCCCTTTGTCATTCCATTCACTCTACTCCCCGCATGGCTAGAGGGC----------------------TGG---------AGGC----
s canFam2.chr3 56030609 103 + 94715083 AGGGAATGCATGGTGTATGGGGGCCCCCGTC--------------------CACTTC---------TGTCCCGTTGCTATTTCCTTGACCATACTTCCAGTATGACTGGGGGAG---GTGCGG---TGGAGCAGGTTC------------------
s loxAfr1.scaffold_8298 30302 144 + 78952 --TGGATGCCTGGT-TTAAGGATCC-GCTCACCCACTTCTGAGTCACGTTACACTTTC--------TGCCCCTTTGCCATTTCATTTATGGTACTCCCAACACCGGGGGAGGGTGCGCTTTGGTTCTTGAGCAGTTTGTGTATATAGGGGGCTGAG
s echTel1.scaffold_304651 631 67 - 10007 --TGGAGGGCTACT-TTAAGAAACC----CTCCCGTTTCTCAG-------------CC--------TGCTTC---------------------------------------------CTTTGGGTTTGAGGTACTTTGT----------------G
a score=87527.0
s mm8.chr7 80082471 121 + 145134094 CTG-AGC---------------CGCTGGCCCCTGGGCTTCCCCTCCAGCCTGGCTTGACTTTGTCTGAGGGACCCTGGGCAGC-TTGCCATCCA---------CCCAGGCTGAAGTGGAGGGGGTGTTGAGCTGCCACCTGGGACTT
s rn4.chr1 136011905 121 + 267910886 TCG-GAC---------------CGCTGGCACCCAGGCTTCCCCTCCAGCCTGGCCTGACTCTGTCTGAGGGACCCTGGGCAGC-TTGCCATCCA---------CGCAGGCAAAAGTGGAGGGGATGTTGAGCTGCCACCTGGAACTT
s oryCun1.scaffold_199771 14138 103 - 75077 CCGCAGT---------------GGATCCCACCTCGGCTGTAGCAGTAGGCCAACCAGG----GCCCGACAGGCGCCCGGCTGTGCTGGCTTCCA-CACCCTCTCCCAGGC---------------------CTGCCACCCAGGC---
s hg18.chr15 88557735 127 + 100338915 CTG-GGCTGAACCAGGGACT--GGCTGGTCTATAGGTTTCCCCTCCAGCC-GGCTGCACTCTG----TAGTGCCCGAGGCAGG-TTTCCACCCC-----TTCTCCCAGGCGTAAGTGGG------ATTGAGTTGCCACCTGGGACTG
s panTro2.chr15 87959980 127 + 100063422 CTG-GGCTGAACCAGGGACT--GGCTGGTCTATAGGTTTCCCCTCCAGCC-GGCTGCACTCTG----TAGTGCCCGTGGCAGG-TTTCCACCCC-----TTCTCCCAGGCGTAAGTGGG------ATTGAGTTGCCACCTGGGACTG
s rheMac2.chr7 69864849 116 + 169801366 CTG-GGCTGAACCAGGGGCT--GGCTGGTCTGCAG----------------GGCTGCACTCTGTCTATAGTGCCCGAGGCAGG-TTTCCACCCC-----TTCTTCCAGTCGTAAGTGGG------GTTGAGCTGCCACCTGGGACTG
s bosTau2.scaffold2397 93191 110 + 117874 CTG-GGC---------------AGCTGGCGCCTCGGCTGCCCCTCCCACCTGGCT-------------GTGACCCTTGGCAAG-TCTCCCCGCCCCCCATGCCCCCAGGCCTGAGCAAG------GCTGAGCTGCCACCT-GGACTA
s canFam2.chr3 56030712 116 + 94715083 TCT-AGC---------------AGCTGGCGCCCCAGCTGTCCTTCCAACCTGGCTGTGCTCTGTCTACGTGACCTTTGGCAGA-TTGCCACTCC-------CTCCCAGGCCCGAGCAGG------GCCAAGCTGCCACCT-GGATGG
s loxAfr1.scaffold_8298 30446 129 + 78952 CTG-AAC-----CAGGGACTGCAGCTAGTGCCTGGGCCACCGCTCCAGCCTGGCTGTGCTCTGTCTACAGGACGCATGGCAAG-TTGCCACCCC----CCTCTCCCAGG-CTAGGTGGG------GCTAAGCTGCCACTTGAAACTT
s echTel1.scaffold_304651 698 101 - 10007 CTG-GAC-----CAGGAACTGCAGCT---------GCTGCCCCTCTAGCCTACCTGTGC---------------CTTGGCAGG-TTGCCAGCCC-------CTCCCAGGCCTAGGTGGG------GTGACGCTGCCTCCTGGGAC--
a score=185399.0
s mm8.chr7 80082592 121 + 145134094 GTGCTTATCTCGGACTCTTGGCATTTCTGTTTCTGGACAGAACCCAAGGGTGGCTTCCCGCTTAGAGCTGTAGGTCCC----ACCCAGGTGGAAATG--CCCTCCGGTGCAGGCAGATAAGCTCTGG
s rn4.chr1 136012026 121 + 267910886 GTGCTTATCTTGGCCTCTTGGCATTTCTGTATCTGGACAGAATCCAAGGGTGGCTTCCCGCTTAGAGCTGTAGGTCCC----ACCCAGGTGGAAATG--CCCTCCGGAGCAGGCAGATAAGCTCTGG
s oryCun1.scaffold_199771 14241 119 - 75077 ---CTTATCTCCGACTGCTGGCATTGCTGTGTCTGGGCAGAGGCCAAGGGCGGCCTCCCGCACAGACACTCGGGGCCC----GCCCAGGTAGAAGTG-CCCCTCCTGTGCAGGCAGATAAGCGCTGG
s hg18.chr15 88557862 119 + 100338915 AGGCTTATCTCTGACTCTTGGCATTTCTTTGTCTGGACAGATTCCAAGGGCGGTCTGCTGCCCAGACTTACAGGGCCT----GCCCAGGTGGAAACG--CTCTTT--TGCAGGTAGATAAGCACGGG
s panTro2.chr15 87960107 119 + 100063422 AGGCTTATCTCTGACTCTTGGCATTTCTTTGTCTGGACAGATTCCAAGGGCGGTCTGCTGCCCAGACTTACAGGGCCT----GCCCAGGTGGAAACG--CTCTTT--TGCAGGTAGATAAGCACGGG
s rheMac2.chr7 69864965 114 + 169801366 AGGCTTATCTCTGATCCTTGGCATTTCTGTGTCTGGACAGATTCCAAGGGCGGTCTGCTGCCCAGACTTACAGGGCCC----GCCCAGGTG-----G--CTCTTC--TGCAGGTAGATAAGCATGGG
s bosTau2.scaffold2397 93301 123 + 117874 AAGCTTATCTCTGACCTTTGGCATTCCTGTGTGTGGACAGATTGCAAGAGCAGCCTCT-GCCCAGGCTTACGGGGACCTGCTGCCTCGGTAGAAATG-CGCCTCCTCTGTAGGCAGATAAGCCCT--
s canFam2.chr3 56030828 121 + 94715083 CAACTTATCTTTGACCTTCGGCATTTCTATATCTGGATGGATCCTAAGTGCAGCCTCCAGCCTAGACTTCCAGGACCC----ACCCTGGGA-AGATG-CCCCTCCTGTGTGGGCAGATAAATGTTGG
s echTel1.scaffold_304651 799 118 - 10007 ATGACAATCT--GACCTTTGACATT--TGTTTTAGGATAGGTTCCAAGTGAAGCCTCCTGCCTAGACTTCCTGATTCT-----CCCAGATAGAAGCGCCCCCTTCTTGGAAGACAGATAAGCGATAA
a score=30120.0
s mm8.chr7 80082713 54 + 145134094 CAA-------ACCAAAGGCAGCCTGT-GCTTCCAGAAAACCTT-GAGGGGTGCAAGAGATAAA
s rn4.chr1 136012147 54 + 267910886 CAA-------ACCAGAGGCAGCCTAC-GTTTCCAGAAAACCTT-GAGGGGTACAAGAGATAAA
s hg18.chr15 88557981 62 + 100338915 CAACCAGCTTATCTGAACCAGCCCTT-GCTTCCAGAGAACTATGGAAAAATCCAAAAGATAAG
s panTro2.chr15 87960226 62 + 100063422 CAACCAGCTTATCTGAACCAGCCCTT-GCTTCCAGAGAACTATGGAAAAATCCAAAAGATAAG
s rheMac2.chr7 69865079 62 + 169801366 CAACCAGCTTATCTGAACCAGCCCTC-GTTTCCAGGTAACTCTGGAAAAATCCAAAAGATGAG
s canFam2.chr3 56030949 40 + 94715083 -------CATATTTGACCCAGCCCTTGGCTTTCAGAAAACC------------ACAA----AG
s echTel1.scaffold_304651 917 55 - 10007 CAA-------ATTCCATCCCACCCTT-CGTTCTGGACGGGCTGGGAGGGGTACAAAAGATAAA
a score=58255.0
s mm8.chr7 80082767 128 + 145134094 GGGGTGCAGGAGCTGTG----TGTCTTGATCTCCCAGA----GTCTTCGTGAGCCT-----------CACTTTTTGTCTTATCCCT---GTGATACACACAGG-AAGCCACAGTGAATTCAGTGGGTGTCAT---------ACAGAAGGGCCTCC-TGGAG-
s rn4.chr1 136012201 139 + 267910886 GGGGTACAGGAGCTGTG----TG-CTTGATGTCGCTGA----GCCTTCGTGAGGCTCCTGTGAGCTGCACTTTTTGTCTCGTCCCT---GTGATAGACACAAG-AAGCCACAGTGAATTCAGTGGGTATCAT---------ATGGAAGGGCCTCCTTGGAC-
s hg18.chr15 88558043 143 + 100338915 AAGGGACCGCAG-TGTC----TGTCTTGGTCTCAC--------TCCTCTTGAGACTCCTGTGAT---CTTTATATGTCTCATTCCTCCCGTGACATGTATGAG-AAACTGCAGCTCATTGAGACGATGTCTCTGCTGCCTGACAGAAGGGCCTAC-TTGAG-
s panTro2.chr15 87960288 143 + 100063422 AAGGGACCGCAG-TGTC----TGTCTTGGTCTCAC--------TCCTCTTGAGACTCCTGTGAT---CTTTATATGTCTCATTCCTCCCGTGACATGTATGAG-AAACTGCAGCTCATTGAGACGATGTCTCTGCTGCCTGACAGAAGGGCCTAC-TTGAG-
s rheMac2.chr7 69865141 147 + 169801366 GAGGGACCACAG-TGTCTGTTTGTCCTGGTCTCAC--------TCCTCATGAGACTCCTGTGAT---CTTTGTATGTCTCATTCCTCCTGTGACATGTATGAG-AATGTACAGCTCAGTGAGATGATGTCTCTGCTGCCTGACAGAAGTGCCTAC-TTGAG-
s bosTau2.scaffold2397 93775 133 + 117874 GGACTGCAGTGGCCATT----TGCTCTGGCCTCACTGA----CTCCTTGTGAGCCCGCTGTGAG---TTTTGTTT---TCATTATCCCCAT------TATGAGAAAACTCCAGTTTGGTGAGATGGCATCTACCCTGCCCT--------ACAAAC-ATGgtg
s canFam2.chr3 56030989 153 + 94715083 GGGATGTGGAAGACGTT----TGCCCTCGTCTCACAGACTCCCTCCTTGTAAGGCTGCTGGGAG---TCATATTTTGCTCATTATCCCTGCGGTATGTATGAG-AAGCCAAAGGTCAGTGAGCTGGAGTTTGCACTGCCCTCCAGAGGGACCGAC-ATGgtg
a score=2607.0
s mm8.chr7 80082895 114 + 145134094 CTTCTCAGAGTGTAGT-----------CCTTGGGCTACC-TCCTCCTAAGTCACTGGG-----------------------AGCTGGTCA-AGAGG------CTCAGACCAGCAGTTTCAGAATCTCTTGGGAGGGCCT--------GGAGTCCGGGTGATGTT
s rn4.chr1 136012340 112 + 267910886 CTTCTCAGA--GTAGT-----------CCTTGGGCCACC-TCCTTCTAAGTTACTGAG-----------------------AGCTGGTCA-AGAGG------CTCAGACCAGCAGTTTCAGAATCTCTTGGGAGGGCCT--------GGAGTCAAGGTACTGTT
s rheMac2.chr7 69865323 119 + 169801366 CTTCTTGTTGACTAGTGTCACCCCCACCCGAGGGCTTCCTTCCTCATTTGCTGCCAGGTGTAAAGCTGAGCTTC-------agctgggcgcagtgg------ctcacacccataatcctagca--ttttgggag------------------------------
s bosTau2.scaffold2397 93908 136 + 117874 cttctcaaagtgtgct-----------ccatgagcctcc-tacttcagaatcccctgg---------gagattcaaaaccttgcatgttc-tcaggccccatcacgggccagcatcgtcagagtcttcagggtcagctcgtggatctagagtgtaggt------
s canFam2.chr3 56031142 126 + 94715083 cttttcagagggtggt-----------ccctgggcctcc-cactttggaattgcctgg---------gag-ctcatagaattgcccgttg-tcagg--ccatcccagggcagtggcagcag-gcctctagggcaggcct------------ttcaggtgacttt
a score=8132.0
s mm8.chr7 80083009 147 + 145134094 TAGGGAGGTTGGCATTGGTGCTGGAACTTTCCTTGGCCCCCCAATTTATCGAAGTACTAAGGGTTGGAAGTCTCTGGAGCTGCAGGAGTT--GAGTTTGAGAAAAGGCTCTTGGTGGTTTAAAGAGA----------------GGTTTCAACTGC--------------------------CTCTGGCCTC
s rn4.chr1 136012452 190 + 267910886 TAGGGAGATTGGGATTGGTACTGGAACTTTCCTTGGCCTCCCAGTGTATT-CAGTACTAAGGGTTGGAAGTCTCGGGTGCTACAAGAATTAAGAGTTTGAGAAGAGGCTCTTGGTAGTTTAGAAAGAGAGAAGGACATCTTTGGGTTTCGACTACCTGTGGTGGCAGTGTCAGAATTCAGGCTCTGGCCTC
|
