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##maf version=1
a score=10542.0
s mm8.chr7 80082352 16 + 145134094 G---AGGGCGGTCC--------------CAGCA-
s rn4.chr1 136011803 16 + 267910886 G---AGGGCGGTCC--------------CAGCA-
s oryCun1.scaffold_199771 14034 30 - 75077 G---AGGGGAACCTCTCCTCCCCTCCGACAAAG-
s hg18.chr15 88557590 17 + 100338915 GA--AGGGAAGCCC--------------CAGAA-
s panTro2.chr15 87959847 17 + 100063422 GA--AGGGAAGCCC--------------CAGAA-
s rheMac2.chr7 69864725 17 + 169801366 GA--AGGGAAGCCC--------------CAGAA-
s canFam2.chr3 56030590 19 + 94715083 AAGGAGGAGAATCC--------------CTATG-
s dasNov1.scaffold_106893 7453 16 + 9831 G---AGGGGGCTGC--------------CCACA-
s loxAfr1.scaffold_8298 30282 20 + 78952 GAGGAGGGGAACCC--------------CTAGGA
s echTel1.scaffold_304651 611 20 - 10007 TAGGAGGGGAATCC--------------CCAGGA
a score=-33148.0
s mm8.chr7 80082368 103 + 145134094 TGAGAGGGCATGCT-GTGAAGGGACTGTGCT---CAGTTCAAGGCATAGTCCACTTCC--------CTTCCCTTGGTCATTCTGTTCGGTGTGTTTCCAGCAGATATGGAGAGT-------------------------------------C----
s rn4.chr1 136011819 86 + 267910886 TGAGAGGGCATGTT-ATGAAGGCACTGTGCT--------------------CACTTTC--------CATCCCATGGTCATTCTGTTGAGTGTGTTCCCAGCAGATACGGAAAGT-------------------------------------C----
s oryCun1.scaffold_199771 14064 74 - 75077 TAGGACTGCCTGGTGGGGGGGGCCCTGCACC--------------------TACTTCTGCAAGGCACGTCCCGCG----------TCTGTGCCTTCGCCGCA-----------T-------------------------------------C----
s hg18.chr15 88557607 128 + 100338915 GGGGAAAGCCTGGT-TAAGGGGCCCTTCACCCCCCTCTCCAAGGCACATTCCCCTTTC--------TGTCCCTTTGTCGTTTCATTCACTCTACTCCCAGCATGGCTGGAGGGC---TTGTGG---CTGGCTCGTTTGG---------AGGC----
s panTro2.chr15 87959864 116 + 100063422 GGGGAAAGCCTGGT-TAAGGGGCCCTTCACCCCCCTCTCCAAGGCACATTCCCCTTTC--------TGTCCCTTTGTCGTTTCATTCACTA------------GGCTAGAGGGC---TTGTGG---CTGGCTCGTTTGG---------AGGC----
s rheMac2.chr7 69864742 107 + 169801366 GGAGAAAGCCTGGT-TAAGGGGCCCTTCA-----CTCTCCAAGGCACATTCCACTTTC--------TGTCCCTTTGTCATTCCATTCACTCTACTCCCCGCATGGCTAGAGGGC----------------------TGG---------AGGC----
s canFam2.chr3 56030609 103 + 94715083 AGGGAATGCATGGTGTATGGGGGCCCCCGTC--------------------CACTTC---------TGTCCCGTTGCTATTTCCTTGACCATACTTCCAGTATGACTGGGGGAG---GTGCGG---TGGAGCAGGTTC------------------
s loxAfr1.scaffold_8298 30302 144 + 78952 --TGGATGCCTGGT-TTAAGGATCC-GCTCACCCACTTCTGAGTCACGTTACACTTTC--------TGCCCCTTTGCCATTTCATTTATGGTACTCCCAACACCGGGGGAGGGTGCGCTTTGGTTCTTGAGCAGTTTGTGTATATAGGGGGCTGAG
s echTel1.scaffold_304651 631 67 - 10007 --TGGAGGGCTACT-TTAAGAAACC----CTCCCGTTTCTCAG-------------CC--------TGCTTC---------------------------------------------CTTTGGGTTTGAGGTACTTTGT----------------G
a score=87527.0
s mm8.chr7 80082471 121 + 145134094 CTG-AGC---------------CGCTGGCCCCTGGGCTTCCCCTCCAGCCTGGCTTGACTTTGTCTGAGGGACCCTGGGCAGC-TTGCCATCCA---------CCCAGGCTGAAGTGGAGGGGGTGTTGAGCTGCCACCTGGGACTT
s rn4.chr1 136011905 121 + 267910886 TCG-GAC---------------CGCTGGCACCCAGGCTTCCCCTCCAGCCTGGCCTGACTCTGTCTGAGGGACCCTGGGCAGC-TTGCCATCCA---------CGCAGGCAAAAGTGGAGGGGATGTTGAGCTGCCACCTGGAACTT
s oryCun1.scaffold_199771 14138 103 - 75077 CCGCAGT---------------GGATCCCACCTCGGCTGTAGCAGTAGGCCAACCAGG----GCCCGACAGGCGCCCGGCTGTGCTGGCTTCCA-CACCCTCTCCCAGGC---------------------CTGCCACCCAGGC---
s hg18.chr15 88557735 127 + 100338915 CTG-GGCTGAACCAGGGACT--GGCTGGTCTATAGGTTTCCCCTCCAGCC-GGCTGCACTCTG----TAGTGCCCGAGGCAGG-TTTCCACCCC-----TTCTCCCAGGCGTAAGTGGG------ATTGAGTTGCCACCTGGGACTG
s panTro2.chr15 87959980 127 + 100063422 CTG-GGCTGAACCAGGGACT--GGCTGGTCTATAGGTTTCCCCTCCAGCC-GGCTGCACTCTG----TAGTGCCCGTGGCAGG-TTTCCACCCC-----TTCTCCCAGGCGTAAGTGGG------ATTGAGTTGCCACCTGGGACTG
s rheMac2.chr7 69864849 116 + 169801366 CTG-GGCTGAACCAGGGGCT--GGCTGGTCTGCAG----------------GGCTGCACTCTGTCTATAGTGCCCGAGGCAGG-TTTCCACCCC-----TTCTTCCAGTCGTAAGTGGG------GTTGAGCTGCCACCTGGGACTG
s bosTau2.scaffold2397 93191 110 + 117874 CTG-GGC---------------AGCTGGCGCCTCGGCTGCCCCTCCCACCTGGCT-------------GTGACCCTTGGCAAG-TCTCCCCGCCCCCCATGCCCCCAGGCCTGAGCAAG------GCTGAGCTGCCACCT-GGACTA
s canFam2.chr3 56030712 116 + 94715083 TCT-AGC---------------AGCTGGCGCCCCAGCTGTCCTTCCAACCTGGCTGTGCTCTGTCTACGTGACCTTTGGCAGA-TTGCCACTCC-------CTCCCAGGCCCGAGCAGG------GCCAAGCTGCCACCT-GGATGG
s loxAfr1.scaffold_8298 30446 129 + 78952 CTG-AAC-----CAGGGACTGCAGCTAGTGCCTGGGCCACCGCTCCAGCCTGGCTGTGCTCTGTCTACAGGACGCATGGCAAG-TTGCCACCCC----CCTCTCCCAGG-CTAGGTGGG------GCTAAGCTGCCACTTGAAACTT
s echTel1.scaffold_304651 698 101 - 10007 CTG-GAC-----CAGGAACTGCAGCT---------GCTGCCCCTCTAGCCTACCTGTGC---------------CTTGGCAGG-TTGCCAGCCC-------CTCCCAGGCCTAGGTGGG------GTGACGCTGCCTCCTGGGAC--
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