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# Example Sequences
This directory contains a variety of example FASTA files to be used to play with
`CAI`. Files ending with `.heg.fasta` are from the
[HEG-DB](http://genomes.urv.cat/HEG-DB/) and are to be used as reference sets,
whereas all other FASTA files contain only single CDSs.
## Directory
### Highly Expressed Genes
| File | Species | Sequences |
|--------------------------------------|-----------------------------------------|-----------|
| [banth1.heg.fasta](banth1.heg.fasta) | *Bacillus anthracis* str. Ames | 330 |
| [ecol.heg.fasta](ecol.heg.fasta) | *Escherichia coli* | 274 |
| [ngon.heg.fasta]() | *Neisseria gonorrhoeae* | 103 |
| [paer.heg.fasta](paer.heg.fasta) | *Pseudomonas aeruginosa* | 61 |
| [saur2.heg.fasta](saur2.heg.fasta) | *Staphylococcus aureus* subsp. *aureus* | 137 |
| [styp2.heg.fasta](styp2.heg.fasta) | *Salmonella enterica* subsp. *enterica* | 214 |
### CDSs
| File | Description | Length |
|--------------------------------------|------------------------------------------------------------------|---------|
| [BoNT.fasta](BoNT.fasta) | *Clostridium botulinum* neurotoxin BoNT gene, complete CDS | 3891 bp |
| [gfp.fasta](gfp.fasta) | *Aequorea victoria* green-fluorescent protein mRNA, complete CDS | 717 bp |
| [insulin.fasta](insulin.fasta) | *Homo sapiens* insulin (INS) gene, complete CDS | 333 bp |
| [luciferase.fasta](luciferase.fasta) | *Photinus pyralis* (firefly) luciferase gene, complete CDS | 1653 bp |
| [oxytocin.fasta](oxytocin.fasta) | *Homo sapiens* oxytocin mRNA, complete CDS | 376 bp |
| [ricin.fasta](ricin.fasta) | *Ricinus communis* ricin-like (LOC8287993), mRNA | 1750 bp |
|
