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@article{Cock2009,
  doi = {10.1093/bioinformatics/btp163},
  url = {https://doi.org/10.1093/bioinformatics/btp163},
  year  = {2009},
  month = {mar},
  publisher = {Oxford University Press ({OUP})},
  volume = {25},
  number = {11},
  pages = {1422--1423},
  author = {P. J. A. Cock and T. Antao and J. T. Chang and B. A. Chapman and C. J. Cox and A. Dalke and I. Friedberg and T. Hamelryck and F. Kauff and B. Wilczynski and M. J. L. de Hoon},
  title = {Biopython: freely available Python tools for computational molecular biology and bioinformatics},
  journal = {Bioinformatics}
}

@article{Sharp1987,
  doi = {10.1093/nar/15.3.1281},
  url = {https://doi.org/10.1093/nar/15.3.1281},
  year  = {1987},
  publisher = {Oxford University Press ({OUP})},
  volume = {15},
  number = {3},
  pages = {1281--1295},
  author = {Paul M. Sharp and Wen-Hsiung Li},
  title = {The codon adaptation index-a measure of directional synonymous codon usage bias, and its potential applications},
  journal = {Nucleic Acids Research}
}

@article{Grote2005,
  doi = {10.1093/nar/gki376},
  url = {https://doi.org/10.1093/nar/gki376},
  year  = {2005},
  month = {jul},
  publisher = {Oxford University Press ({OUP})},
  volume = {33},
  number = {Web Server},
  pages = {W526--W531},
  author = {A. Grote and K. Hiller and M. Scheer and R. Munch and B. Nortemann and D. C. Hempel and D. Jahn},
  title = {{JCat}: a novel tool to adapt codon usage of a target gene to its potential expression host},
  journal = {Nucleic Acids Research}
}

@article{Eschke2018,
  doi = {10.1371/journal.ppat.1006857},
  url = {https://doi.org/10.1371/journal.ppat.1006857},
  year  = {2018},
  month = {jan},
  publisher = {Public Library of Science ({PLoS})},
  volume = {14},
  number = {1},
  pages = {e1006857},
  author = {Kathrin Eschke and Jakob Trimpert and Nikolaus Osterrieder and Dusan Kunec},
  title = {Attenuation of a very virulent Marek{\textquotesingle}s disease herpesvirus ({MDV}) by codon pair bias deoptimization},
  journal = {{PLOS} Pathogens}
}

@article{Rodriguez2017,
  doi = {10.1002/pro.3336},
  url = {https://doi.org/10.1002/pro.3336},
  year  = {2017},
  month = {nov},
  publisher = {Wiley},
  volume = {27},
  number = {1},
  pages = {356--362},
  author = {Anabel Rodriguez and Gabriel Wright and Scott Emrich and Patricia L. Clark},
  title = {{\%}{MinMax}: A versatile tool for calculating and comparing synonymous codon usage and its impact on protein folding},
  journal = {Protein Science}
}