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Source: python-cobra
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Afif Elghraoui <afif@debian.org>
Section: python
Testsuite: autopkgtest-pkg-python
Priority: optional
Build-Depends: debhelper-compat (= 13),
dh-python,
libglpk-dev,
python3-dev,
python3-setuptools,
python3-depinfo,
python3-future,
python3-numpy,
python3-optlang,
python3-ruamel.yaml,
python3-pandas (>= 0.17.0),
python3-pip,
python3-pipdeptree,
python3-requests,
python3-swiglpk (>= 4.65.1),
python3-tabulate,
python3-sbml5,
python3-simplejson,
cython3,
python3-pytest <!nocheck>,
python3-pytest-benchmark <!nocheck>,
python3-jsonschema (>> 2.5.0) <!nocheck>,
libsbml5 <!nocheck>,
python3-matplotlib <!nocheck>,
python3-appdirs <!nocheck>,
python3-diskcache <!nocheck>,
python3-httpx <!nocheck>,
python3-pydantic <!nocheck>,
python3-rich <!nocheck>
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/python-cobra
Vcs-Git: https://salsa.debian.org/med-team/python-cobra.git
Homepage: https://opencobra.github.io/cobrapy/
Rules-Requires-Root: no
Package: python3-cobra
Architecture: any-amd64 arm64 armel armhf any-i386 mips mips64el mipsel ppc64el alpha hppa m68k powerpc powerpcspe ppc64 sh4 sparc64 x32
Depends: ${shlibs:Depends},
${misc:Depends},
${python3:Depends},
python-cobra-data (= ${source:Version}),
python3-numpy,
python3-ruamel.yaml,
python3-pandas (>= 0.17.0),
python3-simplejson,
python3-swiglpk,
python3-tabulate,
python3-sbml5
Suggests: python3-matplotlib,
qsopt-ex
Description: constraint-based modeling of biological networks with Python 3
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
Package: python-cobra-data
Architecture: all
Depends: ${misc:Depends}
Description: constraint-based modeling of biological networks (data)
COnstraint-Based Reconstruction and Analysis (COBRA) methods are widely
used for genome-scale modeling of metabolic networks in both prokaryotes
and eukaryotes. COBRApy is a constraint-based modeling package that is
designed to accommodate the biological complexity of the next generation
of COBRA models and provides access to commonly used COBRA methods, such
as flux balance analysis, flux variability analysis, and gene deletion
analyses.
.
This package provides required and sample data files.
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