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Documentation for COBRApy
=========================
For installation instructions, please see `INSTALL.rst
<https://github.com/opencobra/cobrapy/blob/devel/INSTALL.rst>`_.
Many of the examples below are viewable as IPython notebooks, which can
be viewed at `nbviewer
<http://nbviewer.ipython.org/github/opencobra/cobrapy/tree/stable/documentation_builder/>`_.
.. toctree::
:numbered: 3
:maxdepth: 2
getting_started
configuration
building_model
io
simulating
deletions
phenotype_phase_plane
sampling
loopless
consistency
gapfilling
media
solvers
constraints_objectives
dfba
pymatbridge
faq
API </autoapi/cobra/index.rst>
Indices and tables
==================
* :ref:`genindex`
* :ref:`modindex`
* :ref:`search`
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