1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28
|
# Release notes for cobrapy 0.12.1
## New features
* Fix/feature that allows summaries to work properly for models with multiple
exchange reactions for the same metabolite.
* Require a later optlang version so that Gurobi can now be used for quadratic
problems.
* cobrapy can now extract primal values from a wider range of solver states.
This is particularly useful to investigate problems in non-optimal states.
## Fixes
* Test different solvers on more text cases than previously.
* Improve the way benchmarks are run.
* Restore automatic documentation builds on readthedocs.org.
* Correct a problem in how geomtric FBA retrieved solutions.
* Update the use of pandas interface of the sampler.
* Correct the sanity checks for the new ROOM implementation.
## Deprecated features
## Backwards incompatible changes
* cobrapy functions that return solution only raise `OptimizationError`s rather
than also potentially raising a `RuntimeError`.
* Linear MOMA is the new default method. It used to be MOMA which excludes GLPK
as a solver due to being a quadratic optimization problem.
|