1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
|
[bumpversion]
current_version = 0.29.1
commit = True
tag = True
parse = (?P<major>\d+)
\.(?P<minor>\d+)
\.(?P<patch>\d+)
(?P<release>[a]*)(?P<num>\d*)
serialize =
{major}.{minor}.{patch}{release}{num}
{major}.{minor}.{patch}
tag_name = {new_version}
[metadata]
name = cobra
url = https://opencobra.github.io/cobrapy
download_url = https://pypi.org/project/cobra
project_urls =
Source Code = https://github.com/opencobra/cobrapy
Documentation = https://cobrapy.readthedocs.io
Bug Tracker = https://github.com/opencobra/cobrapy/issues
author = The cobrapy core development team.
author_email = cobra-pie@googlegroups.com
maintainer = Moritz E. Beber
maintainer_email = moritz.beber@gmail.com
classifiers =
Development Status :: 5 - Production/Stable
Intended Audience :: Science/Research
License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
License :: OSI Approved :: GNU Lesser General Public License v2 or later (LGPLv2+)
Natural Language :: English
Operating System :: OS Independent
Programming Language :: Python :: 3.8
Programming Language :: Python :: 3.9
Programming Language :: Python :: 3.10
Programming Language :: Python :: 3.11
Programming Language :: Python :: Implementation :: CPython
Topic :: Scientific/Engineering :: Bio-Informatics
license = LGPL-2.0-or-later OR GPL-2.0-or-later
description = COBRApy is a package for constraint-based modeling of metabolic networks.
long_description = file: README.rst, INSTALL.rst
long_description_content_type = text/x-rst
keywords =
metabolism
biology
constraint-based
linear programming
mixed-integer
optimization
flux-balance analysis
reconstruction
[options]
zip_safe = True
install_requires =
depinfo ~=2.2
diskcache ~=5.0
httpx ~=0.24
numpy >=1.13
optlang ~=1.8
pandas >=1.0,<3.0
platformdirs
pydantic >=1.6
python-libsbml ~=5.19
rich >=8.0
ruamel.yaml ~=0.16
swiglpk
tests_require =
tox
packages = find:
package_dir =
= src
[options.packages.find]
where = src
[options.package_data]
cobra =
data/*
io/*.json
[options.extras_require]
array =
scipy
development =
black
bumpversion
isort
tox
[bdist_wheel]
universal = 1
[bumpversion:part:release]
optional_value = placeholder
first_value = placeholder
values =
placeholder
a
[bumpversion:file:setup.py]
search = version="{current_version}"
replace = version="{new_version}"
[bumpversion:file:src/cobra/__init__.py]
search = __version__ = "{current_version}"
replace = __version__ = "{new_version}"
|
