1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
|
"""Test functions of group via model.py."""
import pytest
from cobra import Model
from cobra.core import Group
def test_group_add_elements(model: Model) -> None:
"""Test adding elements to a group."""
num_members = 5
reactions_for_group = model.reactions[0:num_members]
group = Group("arbitrary_group1")
group.add_members(reactions_for_group)
group.kind = "collection"
# number of member sin group should equal the number of reactions
# assigned to the group
assert len(group.members) == num_members
# Choose an overlapping, larger subset of reactions for the group
num_total_members = 12
reactions_for_larger_group = model.reactions[0:num_total_members]
group.add_members(reactions_for_larger_group)
assert len(group.members) == num_total_members
def test_group_kind() -> None:
"""Test SBML compliance and group kind."""
group = Group("arbitrary_group1")
with pytest.raises(ValueError) as excinfo:
group.kind = "non-SBML compliant group kind"
assert "Kind can only by one of:" in str(excinfo.value)
group.kind = "collection"
assert group.kind == "collection"
|
